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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S18645.g09631.01.t

Possible name(s)

SOX14; SOX2; SOX21

Gene model

Phfumi.CG.MTP2014.S18645.g09631

Location

S18645 [1,624 / 3,027]

Sequences

Amino acid sequence

Length: 259

>Phfumi.CG.MTP2014.S18645.g09631.01.p
MTIMESPDVIREQETPSPTPSNEDSIMTKQSIDAGHVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGASWKLLTEYEKRPFIDEAKRLRALHMKEHPDYKYRPRRKPKSLIKPKD
RFAFPMFPSSGLPSPTHDHSVVMAAQQAAAAQLSIDSIVADKARAAAAAAFYSTSQSRTT
TSFPSLNQLSMTSQADAANLNLVAAITQSRLSSRSPRSDIIGLPNLPLDLRIADPRISPL
QWQPFPLGAILPDRRRHGS

Nucleotide sequence

Length: 778

>Phfumi.CG.MTP2014.S18645.g09631.01.t
ATGACCATCATGGAGAGTCCTGACGTCATCAGGGAGCAAGAGACCCCCAGCCCGACCCCC
TCAAATGAGGATAGCATTATGACGAAACAAAGCATCGACGCGGGTCACGTGAAACGACCG
ATGAACGCCTTTATGGTGTGGTCACGTGGTCAGAGAAGAAAAATGGCTCAAGAAAATCCC
AAGATGCATAATTCCGAGATTTCTAAGAGACTCGGGGCCTCGTGGAAGCTTCTGACTGAG
TACGAGAAGCGACCATTCATCGACGAAGCCAAACGCCTTCGCGCTCTGCACATGAAGGAA
CACCCCGACTACAAATATCGACCAAGAAGGAAGCCTAAGTCTTTGATCAAACCCAAGGAC
AGATTCGCTTTCCCCATGTTCCCTTCATCCGGGCTTCCTTCACCAACCCATGATCACTCT
GTCGTCATGGCAGCGCAGCAGGCAGCCGCCGCTCAATTGTCGATCGATTCCATTGTTGCC
GACAAAGCCCGGGCCGCCGCTGCCGCCGCTTTCTACTCGACGTCACAATCCCGAACGACG
ACTTCATTTCCGAGTCTGAACCAACTTTCTATGACGTCACAAGCGGACGCGGCCAACCTG
AACCTGGTTGCGGCGATCACGCAGAGTAGACTCAGCAGCCGTAGCCCGCGATCTGACATC
ATCGGGTTACCCAACCTCCCCCTCGATTTACGGATCGCCGACCCACGGATCAGCCCCCTC
CAGTGGCAGCCCTTTCCTCTCGGCGCCATCCTCCCCGACCGCCGCCGCCATGGCAGCA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[24-109] 3.93E-29
Gene3D
HMG_box_dom_sf (IPR036910) - T[35-112] 1.4E-31
SMART
HMG_box_dom (IPR009071) - T[36-106] 7.1E-27
Pfam
HMG_box_dom (IPR009071) - T[37-105] 8.9E-27
ProSiteProfiles
HMG_box_dom (IPR009071) - T[37-105] 22.697

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX2_HUMAN 87.64 % 169 4.57E-51
SOX21_HUMAN 90.11 % 175 4.88E-54
SOX14_HUMAN 86.813 % 174 5.04E-54