- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S1386.g03655.01.t
Possible name(s)
NLE1; TAF5L; WDR12
Gene model
Location
S1386 [507 / 6,019]
Amino acid sequence
Length: 303
>Phfumi.CG.MTP2014.S1386.g03655.01.p
MAQIQVKFFTQQERYKVSEAPFSVLGSVSGIDLCDLINKLRLEQDTDSETKSFDFIVNGE
FLRSSLLQHIEEKGLSVESVLPVEYFEAKESPKLKSTLSENDWISGLQLSKPYIVTGEKD
SNKNLASTSQDQKIVLWKFDTEKNSLKPKFCCKGHSRSVECIAVNPKHETFASGSWDCTI
KIWSASYIPEKGGLEDEQITSASKKKRAKLEQAGISRVPQMTVAGHTEVVSGLVWMDNNQ
LCSGSWDHTLRLWDMSEGKETSQLRGTKAILSVDYSTLNQTLVTGNTDRHVRLWDPRSTG
TTV
Nucleotide sequence
Length: 909
>Phfumi.CG.MTP2014.S1386.g03655.01.t
ATGGCACAAATTCAAGTAAAGTTCTTTACACAGCAGGAAAGATATAAAGTTAGTGAAGCT
CCATTTTCTGTTCTGGGTTCAGTATCTGGAATAGATCTGTGTGATTTAATAAACAAACTT
CGACTTGAACAGGACACTGATTCAGAAACTAAATCTTTCGATTTCATTGTTAATGGAGAA
TTTCTAAGATCATCCCTTCTGCAACATATTGAGGAAAAGGGCCTTTCTGTGGAATCTGTT
CTTCCTGTTGAATATTTTGAAGCTAAAGAATCCCCAAAACTTAAATCAACATTGTCTGAA
AATGATTGGATCAGTGGATTACAACTAAGCAAACCATATATTGTAACAGGTGAGAAAGAT
TCTAACAAAAACCTTGCAAGCACTTCTCAAGATCAAAAGATAGTCTTGTGGAAGTTCGAC
ACAGAAAAAAATTCTTTAAAACCCAAGTTTTGTTGCAAAGGACATTCCAGAAGTGTAGAA
TGTATTGCTGTGAACCCAAAACATGAAACATTTGCATCCGGTTCATGGGATTGCACGATA
AAAATTTGGTCAGCATCCTACATCCCTGAAAAAGGGGGGCTAGAGGATGAACAGATCACC
TCAGCAAGCAAAAAGAAAAGAGCCAAGTTAGAACAAGCTGGAATATCCAGGGTTCCTCAG
ATGACAGTGGCTGGTCACACTGAGGTCGTGTCAGGTTTAGTTTGGATGGACAACAACCAG
TTATGTAGTGGTTCATGGGACCACACACTCCGATTGTGGGACATGTCTGAAGGAAAAGAA
ACATCACAACTACGTGGAACTAAGGCGATTTTGTCTGTGGATTATTCGACACTTAATCAA
ACGTTAGTCACTGGAAATACTGACAGGCATGTGAGGTTGTGGGATCCCAGAAGTACAGGT
ACAACTGTT
| Pfam |
NLE (IPR012972) - T[4-70] 1.9E-14 |
| SMART |
WD40_repeat (IPR001680) - T[91-138] 2.1 - T[145-184] 3.7E-9 - T[216-254] 6.9E-7 - T[257-295] 8.6E-4 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[102-303] 2.0E-43 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[119-298] 7.94E-38 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[125-303] 18.906 |
| Pfam |
WD40_repeat (IPR001680) - T[149-184] 2.1E-7 - T[219-254] 2.1E-5 - T[259-295] 0.0013 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[152-184] 12.28 - T[223-263] 12.814 - T[270-303] 10.174 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[171-185] 3.9E-7 - T[241-255] 3.9E-7 - T[282-296] 3.9E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[241-255] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR12_HUMAN | 36.556 % | 220 | 3.37E-69 |
