- Transcript 'Phfumi.CG.MTP2014.S1...'
Transcript Model
Transcript Id
Phfumi.CG.MTP2014.S1161.g03348.01.t
Possible name(s)
DAW1; PAFAH1B1; SPAG16
Gene model
Location
S1161 [17,260 / 21,268]
Amino acid sequence
Length: 601
>Phfumi.CG.MTP2014.S1161.g03348.01.p
DVSVAEDSDGEYEYEEVPVDEDLSVITTDLAEDLHKAVHVIEEARQDEKAFHQKSESAPL
ASVIQRPEVVDDFVRNFMLRMGLRRTLECFQTEWYEMQQKGLLGEEDIGVVPDVYSKNQA
LNDEVKHLKQELEKYKLAASKAKETYIKLQKERDFHKINHKRIVQEKNRLITDIKRLKKH
YSSYEPTLRQLKHKYELAMKEKMLTKLERDRAVGQVTGLQATLRNVETGKDEKIPPLSGY
RVERSVLPEGPTQLSLREAREQLVSNVRQETISSPFAAPQKHRSEFPPDCRVNPYLTSVK
GPPAHLTRTGGFRQTGCIRAHDLSVSNVTLHPRKQIAVTTSDDHLWKMWAIPGGDIIMTG
EGHTDWIADCDFHPGGSQLATASGDACVKVWDFAKASCVLTFPDHTHAVWGVSWHSCGDF
LASCSMDNTSKIWDVNSEKCLATLRGHADSVNSIQFLYFANTLLTSSADKTLSLWDARTG
LCAQTFYGHMHSVNNAVFNLKGDTIGSCDSYGTVKFWDVRHVSPMMTVDVGPHPANQVAF
DPSGHLLAVASNDATVKMIEIGTSEVTLLAGHDDAVQAVDFDKGGQFMISGGSDGSLRMW
S
Nucleotide sequence
Length: 1,806
>Phfumi.CG.MTP2014.S1161.g03348.01.t
GATGTGTCCGTAGCAGAAGATTCTGATGGGGAGTATGAATATGAGGAGGTCCCTGTCGAT
GAAGATTTAAGTGTTATTACAACAGATTTGGCAGAAGACCTTCATAAAGCTGTCCATGTG
ATAGAAGAGGCAAGACAAGATGAAAAGGCATTTCATCAAAAGTCTGAAAGCGCACCTTTA
GCATCAGTGATTCAACGCCCAGAAGTTGTTGATGATTTTGTTAGAAATTTCATGCTAAGA
ATGGGTTTAAGGAGGACACTGGAGTGCTTTCAAACGGAATGGTATGAAATGCAACAGAAA
GGGCTGCTTGGTGAGGAAGATATAGGGGTTGTTCCAGATGTGTATAGCAAAAATCAAGCA
TTGAATGATGAAGTGAAGCATCTGAAACAAGAACTTGAAAAATACAAACTTGCTGCAAGT
AAGGCTAAAGAAACCTACATCAAACTTCAAAAAGAAAGAGACTTTCACAAAATCAACCAC
AAAAGAATTGTCCAAGAGAAAAACAGACTAATCACTGACATCAAAAGACTGAAGAAACAC
TACAGTTCATACGAACCAACACTGCGCCAACTAAAACACAAGTATGAACTTGCAATGAAA
GAAAAAATGTTAACCAAATTGGAAAGAGATCGAGCAGTTGGTCAGGTTACTGGCTTGCAA
GCTACTCTCCGCAATGTTGAAACAGGAAAAGATGAAAAAATACCTCCATTGTCAGGATAC
AGAGTAGAAAGATCGGTCTTGCCGGAGGGTCCTACACAATTGTCCCTCCGTGAGGCAAGA
GAACAGCTTGTATCAAATGTTAGACAAGAAACTATCAGTTCACCATTTGCAGCTCCACAA
AAGCATAGAAGTGAATTTCCACCAGATTGTAGAGTGAATCCATACCTTACAAGTGTTAAA
GGTCCACCAGCCCATCTGACCCGCACAGGAGGTTTCAGACAAACTGGATGCATTCGAGCA
CATGATCTTTCTGTCAGCAATGTAACTCTGCACCCACGCAAGCAAATAGCTGTAACAACA
TCTGATGACCACCTGTGGAAGATGTGGGCTATTCCTGGTGGGGACATTATAATGACTGGT
GAAGGCCACACAGATTGGATTGCGGATTGTGATTTTCACCCAGGAGGTTCCCAGCTTGCT
ACTGCTAGTGGTGATGCCTGTGTGAAAGTGTGGGATTTTGCCAAGGCTTCTTGCGTACTT
ACCTTTCCTGATCACACTCACGCTGTGTGGGGTGTGTCTTGGCATTCCTGTGGAGATTTT
CTTGCTTCTTGCTCAATGGATAACACCTCTAAAATTTGGGATGTAAACAGTGAGAAATGT
CTGGCCACACTGAGAGGACATGCAGATTCAGTCAACAGCATCCAGTTTCTTTACTTTGCA
AACACTCTGCTAACATCTTCCGCTGACAAAACCCTTTCTCTGTGGGATGCCAGGACGGGT
TTGTGTGCACAGACATTCTATGGACACATGCACTCTGTCAATAATGCAGTGTTCAATCTA
AAGGGAGACACAATAGGTTCATGTGACAGCTATGGAACCGTGAAGTTTTGGGATGTTCGA
CATGTGTCACCTATGATGACTGTAGATGTTGGCCCACACCCGGCAAACCAAGTTGCGTTT
GATCCATCAGGACATCTACTGGCAGTCGCAAGTAACGATGCAACTGTCAAGATGATTGAA
ATTGGGACAAGCGAGGTGACCTTGCTAGCAGGACATGACGACGCAGTGCAAGCTGTGGAC
TTTGACAAAGGAGGCCAATTTATGATATCAGGAGGCTCAGATGGAAGCTTACGAATGTGG
TCATGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[305-423] 2.3E-28 - T[424-601] 1.7E-49 |
| SMART |
WD40_repeat (IPR001680) - T[311-350] 0.59 - T[353-392] 5.1E-9 - T[395-434] 3.5E-9 - T[437-476] 3.0E-8 - T[479-518] 0.0038 - T[521-560] 0.048 - T[562-601] 5.5E-7 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[313-600] 6.83E-73 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[318-359] 9.807 - T[360-401] 13.316 - T[402-443] 13.616 - T[444-485] 13.951 - T[486-527] 9.673 - T[569-601] 16.29 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[318-601] 57.027 |
| Pfam |
WD40_repeat (IPR001680) - T[357-392] 1.6E-4 - T[397-434] 3.8E-6 - T[438-476] 3.9E-6 - T[569-601] 1.3E-5 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[379-393] . - T[421-435] . - T[463-477] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[421-435] 8.6E-7 - T[463-477] 8.6E-7 - T[588-601] 8.6E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPG16_HUMAN | 48.259 % | 601 | 0 |
| DAW1_HUMAN | 31.01 % | 144 | 6.92E-38 |
| LIS1_HUMAN | 31.923 % | 143 | 1.7E-37 |