Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Clone 'cien94821' > 
  2. Clone 'cien45841' > 
  3. Clone 'AHC0AAA173YF20' > 
  4. Transcript 'Phfumi.CG.MTP2014.S1...'

Transcript Model

Transcript Id

Phfumi.CG.MTP2014.S11361.g08778.01.t

Possible name(s)

PGAM5; SNRPA; SNRPB2

Gene model

Phfumi.CG.MTP2014.S11361.g08778

Location

S11361 [0 / 2,754]

Sequences

Amino acid sequence

Length: 293

>Phfumi.CG.MTP2014.S11361.g08778.01.p
MRRQLWKAVGIVASGGATFSIFKCCEWNRKEQKLYNPLSLFLKTAHAAVSEAPKWDNDWD
KRACDKATATRHIILIRHGQYNLAGQGDEQKYLTSLGKEQALFTGLRLKELGLDKKLSLV
TYSTMTRAKETCDLIYKQLDAPINLEKSDLLREGAPIEPDPPVTHWSPDPKTFFNDGARI
ETAFRHFIHRADPEQKDDSYELLFGQILEIIAMKTLKMRGQAFVVFKDINSATNALRSMQ
GFPFYDKPMRLAYAKKDSDVVAKLKGTFQERTKEKKKRKKEPKKVCAILKQHI

Nucleotide sequence

Length: 1,209

>Phfumi.CG.MTP2014.S11361.g08778.01.t
ATGAGGCGACAACTTTGGAAGGCGGTGGGAATAGTGGCATCTGGAGGTGCTACGTTTTCT
ATTTTTAAATGCTGTGAGTGGAATAGAAAGGAACAGAAGTTATATAACCCCCTATCCCTT
TTTTTAAAAACTGCTCATGCTGCTGTATCCGAAGCTCCCAAATGGGACAATGACTGGGAC
AAGCGGGCTTGTGACAAAGCTACAGCCACACGACACATCATTTTAATTCGCCATGGACAA
TACAATTTGGCTGGTCAAGGAGATGAACAAAAGTACTTGACAAGTTTAGGGAAAGAACAA
GCCCTTTTTACTGGTTTGAGGTTAAAGGAATTGGGATTGGACAAAAAGCTGAGTTTGGTG
ACTTATTCCACTATGACAAGAGCCAAAGAAACTTGTGATTTAATTTACAAACAACTTGAT
GCTCCCATTAATTTGGAAAAGTCTGATTTGCTGAGAGAAGGTGCACCAATTGAGCCCGAT
CCACCGGTAACTCATTGGTCACCAGACCCCAAAACATTTTTTAATGATGGTGCACGCATA
GAAACTGCCTTCCGACATTTTATACATCGGGCAGATCCAGAACAGAAAGACGACTCCTAT
GAGTTGCTTTTTGGACAAATTTTGGAGATCATTGCAATGAAGACATTAAAGATGCGAGGC
CAGGCTTTTGTGGTCTTTAAGGATATCAACAGTGCTACAAATGCACTTCGGTCGATGCAG
GGATTTCCTTTTTATGACAAACCTATGAGACTTGCTTATGCCAAAAAAGATTCGGATGTT
GTTGCAAAACTGAAGGGAACCTTTCAAGAACGCACAAAGGAAAAGAAAAAGAGAAAGAAG
GAACCGAAGAAGGTATGTGCAATTCTGAAGCAACACATATAGATTTTGAAGTCATTATTT
ACACTATATCGCACAAAGAACATTGATATTTTTCCAACAGGCAATGGAGCCAAGGGAAAT
GAGGAAGGCGGGAAATTTGGGCCCAATCACATTCTTTTTCTTCAAAACCTGCCTCCAGAG
ACTCAGGAGGGAATGTTGAGTGTGCTTTTTGGCAGGTTCATGGGGTACAAGGAGGTCCGG
CCAGTCCCTGGCCGACATGACATTGCTTTTGTGGAATTCGAAAATGAACAGCAGGCCGCA
GATGCAAAAGGTGCTCTTCAAGGTTTCAAGGTCTCCCCAGACCACGCCATGAAAGTTACA
TTTGCTAAG

InterProScan

Gene3D
His_PPase_superfam (IPR029033) - T[64-171] 2.0E-15
SUPERFAMILY
His_PPase_superfam (IPR029033) - T[70-196] 9.3E-17
CDD
His_Pase_superF_clade-1 (IPR013078) - T[72-153] 4.5363E-14
Pfam
His_Pase_superF_clade-1 (IPR013078) - T[73-153] 8.4E-9
ProSiteProfiles
RRM_dom (IPR000504) - T[184-256] 11.298
SMART
RRM_dom (IPR000504) - T[185-252] 1.3E-4
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[192-278] 1.8E-17
Pfam
RRM_dom (IPR000504) - T[204-249] 6.1E-6
SUPERFAMILY
RBD_domain_sf (IPR035979) - T[204-267] 6.79E-13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
PGAM5_HUMAN 46.821 % 159 3.0E-47
RU2B_HUMAN 58.228 % 106 1.15E-27
SNRPA_HUMAN 64.368 % 125 2.8E-34