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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S9...'

Gene Card

Best human hits

DDX27; DDX47; DDX54

Species

P.mammillata

Unique Gene ID

Phmamm.g00002962

Gene Model ID

Phmamm.CG.MTP2014.S90.g02962

Location

S90:247698..254182

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S90.g02962.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

21 results

AHC0AAA12YK13

Plate: Plate_12_K13

AHC0AAA22YA22

Plate: Plate_22_A22

AHC0AAA5YL18

Plate: Plate_5_L18

AHC0AAA31YF07

Plate: Plate_31_F07

AHC0AAA43YF14

Plate: Plate_43_F14

AHC0AAA59YK24

Plate: Plate_59_K24

AHC0AAA101YC12

Plate: Plate_101_C12

AHC0AAA117YP05

Plate: Plate_117_P05

AHC0AAA132YO05

Plate: Plate_132_O05

AHC0AAA145YE02

Plate: Plate_145_E02

AHC0AAA147YB21

Plate: Plate_147_B21

AHC0AAA150YG08

Plate: Plate_150_G08

AHC0AAA88YL08

Plate: Plate_88_L08

AHC0AAA160YO04

Plate: Plate_160_O04

AHC0AAA162YC11

Plate: Plate_162_C11

AHC0AAA165YA13

Plate: Plate_165_A13

AHC0AAA205YP24

Plate: Plate_205_P24

AHC0AAA260YK09

Plate: Plate_260_K09

AHC0AAA261YD23

Plate: Plate_261_D23

AHC0AAA262YL23

Plate: Plate_262_L23

AHC0AAA266YG23

Plate: Plate_266_G23

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C Pfam Helicase, C-terminal
RNA-helicase_DEAD-box_CS ProSitePatterns ATP-dependent RNA helicase DEAD-box, conserved site
Helicase_C SMART Helicase, C-terminal
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain

GOSlim

17 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
nucleic acid binding Blast molecular function
transcription corepressor activity Blast molecular function
RNA binding Blast molecular function
receptor binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
Golgi apparatus Blast cellular component
membrane Blast cellular component
hydrolase activity Blast molecular function
nucleoside-triphosphatase activity Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
transcription factor binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 695 0.0
nucleic acid binding Hs molecular function 695 0.0
transcription corepressor activity Hs molecular function 240 2.76e-68
RNA binding Hs molecular function 695 0.0
ATP-dependent RNA helicase activity Hs molecular function 695 0.0
helicase activity Hs molecular function 695 0.0
receptor binding Hs molecular function 240 2.76e-68
protein binding Hs molecular function 695 0.0
ATP binding Hs molecular function 695 0.0
nucleus Hs cellular component 695 0.0
nucleoplasm Hs cellular component 275 3.64e-85
chromosome Hs cellular component 695 0.0
nucleolus Hs cellular component 695 0.0
cytoplasm Hs cellular component 695 0.0
Golgi apparatus Hs cellular component 240 2.76e-68
membrane Hs cellular component 275 3.64e-85
hydrolase activity Hs molecular function 695 0.0
estrogen receptor binding Hs molecular function 240 2.76e-68

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 2.0E-46
ATP binding Pfam molecular function 2.0E-46