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GENE CARD

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Gene Card

Best human hits

COL17A1; COL28A1; COL3A1

Species

P.mammillata

Unique Gene ID

Phmamm.g00012491

Gene Model ID

Phmamm.CG.MTP2014.S869.g12491

Location

S869:35813..40246

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S869.g12491.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

8 results

AHC0AAA34YB16

Plate: Plate_34_B16

AHC0AAA53YD16

Plate: Plate_53_D16

AHC0AAA103YH17

Plate: Plate_103_H17

AHC0AAA147YG15

Plate: Plate_147_G15

AHC0AAA88YF01

Plate: Plate_88_F01

AHC0AAA147YG13

Plate: Plate_147_G13

AHC0AAA169YM22

Plate: Plate_169_M22

AHC0AAA269YN24

Plate: Plate_269_N24

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term Analysis Definition
Collagen Pfam Collagen triple helix repeat

GOSlim

38 results

GO Term Annotation Origin Type
integrin binding Blast molecular function
protein binding Orthology molecular function
extracellular region Orthology cellular component
extracellular space Blast cellular component
endoplasmic reticulum lumen Blast cellular component
plasma membrane Orthology cellular component
integral component of plasma membrane Orthology cellular component
cell adhesion Orthology biological process
membrane Orthology cellular component
integral component of membrane Orthology cellular component
cell junction Blast cellular component
metal ion binding Blast molecular function
receptor binding Orthology molecular function
endoplasmic reticulum membrane Orthology cellular component
cytoskeleton Orthology cellular component
immune response Orthology biological process
multicellular organism development Orthology biological process
gene expression Orthology biological process
positive regulation of gene expression Orthology biological process
cell differentiation Orthology biological process
intracellular membrane-bounded organelle Orthology cellular component
apical part of cell Orthology cellular component
positive regulation of canonical Wnt signaling pathway Orthology biological process
macromolecular complex Orthology cellular component
animal organ development Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
cytokine-mediated signaling pathway Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
intracellular signal transduction Orthology biological process
positive regulation of signal transduction Orthology biological process
anatomical structure formation involved in morphogenesis Orthology biological process
enzyme binding Blast molecular function
enzyme regulator activity Blast molecular function
serine-type endopeptidase activity Blast molecular function
extracellular region part Blast cellular component
structural molecule activity Blast molecular function
cell-substrate junction Blast cellular component
peptidase activity Blast molecular function

GO (Orthology)

28 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
protein binding Hs molecular function
extracellular region Hs cellular component
collagen trimer Hs cellular component
plasma membrane Hs cellular component
integral component of plasma membrane Hs cellular component
cell-matrix adhesion Hs biological process
membrane Hs cellular component
integral component of membrane Hs cellular component
skin development Hs biological process
receptor binding Hs molecular function
tumor necrosis factor receptor binding Hs molecular function
endoplasmic reticulum membrane Hs cellular component
lipid droplet Hs cellular component
cytoskeleton Hs cellular component
immune response Hs biological process
multicellular organism development Hs biological process
gene expression Hs biological process
positive regulation of gene expression Hs biological process
cell differentiation Hs biological process
tumor necrosis factor-mediated signaling pathway Hs biological process
positive regulation of I-kappaB kinase/NF-kappaB signaling Hs biological process
intracellular membrane-bounded organelle Hs cellular component
pigmentation Hs biological process
apical part of cell Hs cellular component
positive regulation of NF-kappaB transcription factor activity Hs biological process
salivary gland cavitation Hs biological process
trachea gland development Hs biological process
positive regulation of canonical Wnt signaling pathway Hs biological process

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
protease binding Hs molecular function 43.9 6.31e-05
serine-type endopeptidase inhibitor activity Hs molecular function 43.9 6.81e-05
integrin binding Hs molecular function 43.9 6.31e-05
extracellular matrix structural constituent Hs molecular function 43.9 6.31e-05
protein binding Hs molecular function 43.9 6.31e-05
extracellular region Hs cellular component 43.9 6.31e-05
proteinaceous extracellular matrix Hs cellular component 43.9 6.31e-05
collagen trimer Hs cellular component 43.9 6.31e-05
collagen type III trimer Hs cellular component 43.9 6.31e-05
basement membrane Hs cellular component 43.9 6.61e-05
extracellular space Hs cellular component 43.9 6.31e-05
endoplasmic reticulum lumen Hs cellular component 43.9 6.31e-05
plasma membrane Hs cellular component 43.9 6.61e-05
integral component of plasma membrane Hs cellular component 43.9 6.61e-05
cell-cell junction Hs cellular component 43.9 6.61e-05
membrane Hs cellular component 43.9 6.61e-05
integral component of membrane Hs cellular component 43.9 6.61e-05
cell junction Hs cellular component 43.9 6.61e-05
hemidesmosome Hs cellular component 43.9 6.61e-05
peptidase inhibitor activity Hs molecular function 43.9 6.81e-05
extracellular matrix Hs cellular component 43.9 6.31e-05
SMAD binding Hs molecular function 43.9 6.31e-05
metal ion binding Hs molecular function 43.9 6.31e-05
platelet-derived growth factor binding Hs molecular function 43.9 6.31e-05

GO (InterProScan)

No result

GO Term Analysis Type e-value