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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S8...'

Gene Card

Best human hits

KHDRBS2; QKI; SF1

Species

P.mammillata

Unique Gene ID

Phmamm.g00002812

Gene Model ID

Phmamm.CG.MTP2014.S84.g02812

Location

S84:251315..256263

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

21 results

AHC0AAA10YE03

Plate: Plate_10_E03

AHC0AAA52YK12

Plate: Plate_52_K12

AHC0AAA60YF13

Plate: Plate_60_F13

AHC0AAA70YN21

Plate: Plate_70_N21

AHC0AAA72YL11

Plate: Plate_72_L11

AHC0AAA77YG04

Plate: Plate_77_G04

AHC0AAA101YG01

Plate: Plate_101_G01

AHC0AAA110YC06

Plate: Plate_110_C06

AHC0AAA132YL02

Plate: Plate_132_L02

AHC0AAA144YD22

Plate: Plate_144_D22

AHC0AAA86YA15

Plate: Plate_86_A15

AHC0AAA158YP18

Plate: Plate_158_P18

AHC0AAA163YN04

Plate: Plate_163_N04

AHC0AAA177YE11

Plate: Plate_177_E11

AHC0AAA181YA19

Plate: Plate_181_A19

AHC0AAA210YB15

Plate: Plate_210_B15

AHC0AAA226YO01

Plate: Plate_226_O01

AHC0AAA248YP06

Plate: Plate_248_P06

AHC0AAA250YA16

Plate: Plate_250_A16

AHC0AAA256YC22

Plate: Plate_256_C22

AHC0AAA266YE04

Plate: Plate_266_E04

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
KH_dom_type_1_sf SUPERFAMILY K Homology domain, type 1 superfamily
Znf_CCHC ProSiteProfiles Zinc finger, CCHC-type
KH_dom_type_1 Pfam K Homology domain, type 1
KH_dom SMART K Homology domain
BBP/SF1 PANTHER BBP/SF1 family
SF1-HH Pfam Splicing factor 1, helix-hairpin domain
KH_dom_type_1_sf Gene3D K Homology domain, type 1 superfamily
Znf_CCHC SMART Zinc finger, CCHC-type

GOSlim

24 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
transcription corepressor activity Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Blast cellular component
ribosome Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
mRNA processing Orthology biological process
multicellular organism development Orthology biological process
zinc ion binding Orthology molecular function
RNA splicing Orthology biological process
nuclear body Orthology cellular component
identical protein binding Orthology molecular function
metal ion binding Orthology molecular function
protein heterodimerization activity Blast molecular function
negative regulation of nucleic acid-templated transcription Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
reproductive process Orthology biological process
negative regulation of cell proliferation Orthology biological process

GO (Orthology)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
spliceosomal complex assembly Hs biological process
mRNA 3'-splice site recognition Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
transcription corepressor activity Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
ribosome Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
mRNA processing Hs biological process
zinc ion binding Hs molecular function
RNA splicing Hs biological process
nuclear body Hs cellular component
male sex determination Hs biological process
identical protein binding Hs molecular function
pre-mRNA branch point binding Hs molecular function
metal ion binding Hs molecular function
negative regulation of smooth muscle cell proliferation Hs biological process
negative regulation of nucleic acid-templated transcription Hs biological process

GO (Blast)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 433 1.15e-142
transcription corepressor activity Hs molecular function 433 1.15e-142
RNA binding Hs molecular function 433 1.15e-142
mRNA binding Hs molecular function 91.7 6.54e-20
protein binding Hs molecular function 433 1.15e-142
nucleus Hs cellular component 433 1.15e-142
nucleoplasm Hs cellular component 433 1.15e-142
spliceosomal complex Hs cellular component 433 1.15e-142
cytoplasm Hs cellular component 91.7 6.54e-20
ribosome Hs cellular component 433 1.15e-142
poly(A) binding Hs molecular function 77.8 2.80e-15
poly(U) RNA binding Hs molecular function 77.8 2.80e-15
zinc ion binding Hs molecular function 433 1.15e-142
nuclear body Hs cellular component 433 1.15e-142
SH3 domain binding Hs molecular function 91.7 6.54e-20
SH2 domain binding Hs molecular function 77.8 2.80e-15
identical protein binding Hs molecular function 433 1.15e-142
pre-mRNA branch point binding Hs molecular function 433 1.15e-142
metal ion binding Hs molecular function 433 1.15e-142
protein heterodimerization activity Hs molecular function 77.8 2.80e-15

GO (InterProScan)

5 results

GO Term Analysis Type e-value
mRNA splicing, via spliceosome PANTHER biological process 9.4E-141
nucleic acid binding SMART molecular function 2.5E-12
RNA binding PANTHER molecular function 9.4E-141
zinc ion binding SMART molecular function 0.0053
pre-mRNA branch point binding PANTHER molecular function 9.4E-141