Aniseed - Gene card

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Genoscope Yasuo Villefranche

32 results

AHC0AAA256YC05

Plate: Plate_256_C05

WashU Genome Browser

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No result

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
DNA_recomb/repair_Rad51	TIGRFAM	DNA recombination/repair protein Rad51
DNA_recomb/repair_RecA-like	PIRSF	DNA recombination and repair protein, RecA-like
RecA_ATP-bd	ProSiteProfiles	DNA recombination and repair protein RecA-like, ATP-binding domain
AAA+_ATPase	SMART	AAA+ ATPase domain
DNA_repair_Rad51/TF_NusA_a-hlx	SUPERFAMILY	DNA repair Rad51/transcription factor NusA, alpha-helical
RecA_monomer-monomer_interface	ProSiteProfiles	DNA recombination and repair protein RecA, monomer-monomer interface
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Rad51_DMC1_RadA	CDD	Rad51/DMC1/RadA
DNA_recomb/repair_Rad51_C	Pfam	DNA recombination and repair protein Rad51-like, C-terminal

GOSlim

36 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
DNA binding	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
microtubule organizing center	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
DNA metabolic process	Orthology	biological process
DNA repair	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
protein C-terminus binding	Orthology	molecular function
membrane	Blast	cellular component
integral component of membrane	Blast	cellular component
macromolecular complex	Orthology	cellular component
identical protein binding	Orthology	molecular function
perinuclear region of cytoplasm	Orthology	cellular component
protein homooligomerization	Orthology	biological process
catalytic activity	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Orthology	cellular component
organelle organization	Orthology	biological process
intracellular organelle part	Orthology	cellular component
hydrolase activity	Orthology	molecular function
DNA replication	Orthology	biological process
reproductive process	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
nuclear body	Orthology	cellular component
enzyme binding	Orthology	molecular function
nuclear part	Blast	cellular component

GO (Orthology)

56 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
recombinase activity	Hs	molecular function
nucleotide binding	Hs	molecular function
nuclear chromosome	Hs	cellular component
four-way junction DNA binding	Hs	molecular function
telomere maintenance via recombination	Hs	biological process
double-strand break repair via homologous recombination	Hs	biological process
DNA recombinase assembly	Hs	biological process
DNA synthesis involved in DNA repair	Hs	biological process
strand displacement	Hs	biological process
nuclear chromosome, telomeric region	Hs	cellular component
chromatin	Hs	cellular component
nuclear chromatin	Hs	cellular component
condensed chromosome	Hs	cellular component
condensed nuclear chromosome	Hs	cellular component
lateral element	Hs	cellular component
DNA binding	Hs	molecular function
double-stranded DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
endodeoxyribonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
microtubule organizing center	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
DNA metabolic process	Hs	biological process
DNA unwinding involved in DNA replication	Hs	biological process
DNA repair	Hs	biological process
DNA recombination	Hs	biological process
mitotic recombination	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
reciprocal meiotic recombination	Hs	biological process
protein C-terminus binding	Hs	molecular function
DNA-dependent ATPase activity	Hs	molecular function
regulation of double-strand break repair via homologous recombination	Hs	biological process
telomere maintenance via telomere lengthening	Hs	biological process
PML body	Hs	cellular component
replication fork processing	Hs	biological process
macromolecular complex	Hs	cellular component
site of double-strand break	Hs	cellular component
interstrand cross-link repair	Hs	biological process
strand invasion	Hs	biological process
identical protein binding	Hs	molecular function
single-stranded DNA-dependent ATPase activity	Hs	molecular function
perinuclear region of cytoplasm	Hs	cellular component
protein homooligomerization	Hs	biological process
meiotic cell cycle	Hs	biological process
DNA polymerase binding	Hs	molecular function
chromosome organization involved in meiotic cell cycle	Hs	biological process
cellular response to ionizing radiation	Hs	biological process
mitotic recombination-dependent replication fork processing	Hs	biological process

GO (Blast)

40 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
recombinase activity	Hs	molecular function	514	0.0
nucleotide binding	Hs	molecular function	514	0.0
nuclear chromosome	Hs	cellular component	514	0.0
four-way junction DNA binding	Hs	molecular function	514	0.0
chromosome, telomeric region	Hs	cellular component	330	1.13e-112
nuclear chromosome, telomeric region	Hs	cellular component	514	0.0
chromatin	Hs	cellular component	514	0.0
nuclear chromatin	Hs	cellular component	514	0.0
condensed chromosome	Hs	cellular component	514	0.0
condensed nuclear chromosome	Hs	cellular component	514	0.0
lateral element	Hs	cellular component	514	0.0
DNA binding	Hs	molecular function	514	0.0
double-stranded DNA binding	Hs	molecular function	514	0.0
single-stranded DNA binding	Hs	molecular function	514	0.0
endodeoxyribonuclease activity	Hs	molecular function	514	0.0
protein binding	Hs	molecular function	514	0.0
ATP binding	Hs	molecular function	514	0.0
nucleus	Hs	cellular component	514	0.0
nucleoplasm	Hs	cellular component	514	0.0
replication fork	Hs	cellular component	112	8.67e-28
chromosome	Hs	cellular component	330	1.13e-112
nucleolus	Hs	cellular component	514	0.0
cytoplasm	Hs	cellular component	514	0.0
mitochondrion	Hs	cellular component	514	0.0
mitochondrial matrix	Hs	cellular component	514	0.0
microtubule organizing center	Hs	cellular component	514	0.0
cytosol	Hs	cellular component	514	0.0
cytoskeleton	Hs	cellular component	514	0.0
protein C-terminus binding	Hs	molecular function	514	0.0
DNA-dependent ATPase activity	Hs	molecular function	514	0.0
membrane	Hs	cellular component	112	8.67e-28
integral component of membrane	Hs	cellular component	112	8.67e-28
PML body	Hs	cellular component	514	0.0
macromolecular complex	Hs	cellular component	514	0.0
Rad51B-Rad51C-Rad51D-XRCC2 complex	Hs	cellular component	112	8.67e-28
site of double-strand break	Hs	cellular component	514	0.0
identical protein binding	Hs	molecular function	514	0.0
single-stranded DNA-dependent ATPase activity	Hs	molecular function	514	0.0
perinuclear region of cytoplasm	Hs	cellular component	514	0.0
DNA polymerase binding	Hs	molecular function	514	0.0

GO (InterProScan)

11 results

GO Term	Analysis	Type	e-value
recombinase activity	TIGRFAM	molecular function	9.1E-184
nucleotide binding	SUPERFAMILY	molecular function	4.71E-17
double-strand break repair via homologous recombination	TIGRFAM	biological process	9.1E-184
DNA binding	CDD	molecular function	2.55627E-146
double-stranded DNA binding	TIGRFAM	molecular function	9.1E-184
single-stranded DNA binding	TIGRFAM	molecular function	9.1E-184
ATP binding	ProSiteProfiles	molecular function	20.583
DNA metabolic process	ProSiteProfiles	biological process	20.583
DNA repair	ProSiteProfiles	biological process	49.374
DNA-dependent ATPase activity	TIGRFAM	molecular function	9.1E-184
mitotic recombination-dependent replication fork processing	TIGRFAM	biological process	9.1E-184

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