Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S8...'

Gene Card

Best human hits

BNC1; BNC2; SALL1

Species

P.mammillata

Unique Gene ID

Phmamm.g00002718

Gene Model ID

Phmamm.CG.MTP2014.S80.g02718

Location

S80:263335..265293

Transcript Models and Sequences

Phmamm.CG.MTP2014.S80.g02718.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_sf	SUPERFAMILY	Zinc finger C2H2 superfamily
Znf_C2H2_type	SMART	Zinc finger C2H2-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type

GOSlim

21 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
zinc ion binding	Blast	molecular function
intracellular membrane-bounded organelle	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
intracellular organelle part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
organelle organization	Blast	biological process
hydrolase activity	Blast	molecular function
cellular protein modification process	Blast	biological process
nucleoplasm part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
heterochromatin	Hs	cellular component	41.2	0.002
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	41.2	0.002
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	108	9.27e-25
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	41.2	0.002
nucleic acid binding	Hs	molecular function	118	1.03e-27
DNA binding	Hs	molecular function	118	1.03e-27
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	108	9.27e-25
histone deacetylase activity	Hs	molecular function	41.2	0.002
protein binding	Hs	molecular function	41.2	0.002
nucleus	Hs	cellular component	118	1.03e-27
nucleoplasm	Hs	cellular component	118	1.03e-27
cytoplasm	Hs	cellular component	108	9.27e-25
beta-catenin binding	Hs	molecular function	41.2	0.002
zinc ion binding	Hs	molecular function	118	1.03e-27
chromocenter	Hs	cellular component	41.2	0.002
NuRD complex	Hs	cellular component	41.2	0.002
intracellular membrane-bounded organelle	Hs	cellular component	108	9.27e-25
sequence-specific DNA binding	Hs	molecular function	41.2	0.002
transcription regulatory region DNA binding	Hs	molecular function	41.2	0.002
metal ion binding	Hs	molecular function	118	1.03e-27

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	0.012