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GENE CARD

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Gene Card

Best human hits

MYD88; SIGIRR; TLR3

Species

P.mammillata

Unique Gene ID

Phmamm.g00002510

Gene Model ID

Phmamm.CG.MTP2014.S71.g02510

Location

S71:257281..259628

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

10 results

AHC0AAA10YE19

Plate: Plate_10_E19

AHC0AAA15YD14

Plate: Plate_15_D14

AHC0AAA105YE02

Plate: Plate_105_E02

AHC0AAA105YK20

Plate: Plate_105_K20

AHC0AAA107YM03

Plate: Plate_107_M03

AHC0AAA96YK07

Plate: Plate_96_K07

AHC0AAA191YM08

Plate: Plate_191_M08

AHC0AAA245YB08

Plate: Plate_245_B08

AHC0AAA255YN23

Plate: Plate_255_N23

AHC0AAA265YC06

Plate: Plate_265_C06

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
TIR_dom ProSiteProfiles Toll/interleukin-1 receptor homology (TIR) domain
TIR_dom SMART Toll/interleukin-1 receptor homology (TIR) domain
Death_domain ProSiteProfiles Death domain
Toll_tir_struct_dom_sf SUPERFAMILY Toll/interleukin-1 receptor homology (TIR) domain superfamily
Death_domain Pfam Death domain
MyD88_Death CDD MyD88, death domain
TIR_dom Pfam Toll/interleukin-1 receptor homology (TIR) domain
Toll_tir_struct_dom_sf Gene3D Toll/interleukin-1 receptor homology (TIR) domain superfamily
Myelin_different_resp_MyD88 PANTHER Myeloid differentiation primary response protein MyD88
Death_domain SMART Death domain
DEATH-like_dom_sf SUPERFAMILY Death-like domain superfamily

GOSlim

49 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
immune system process Orthology biological process
RNA binding Blast molecular function
transmembrane signaling receptor activity Blast molecular function
receptor binding Orthology molecular function
protein binding Orthology molecular function
intracellular Blast cellular component
nucleus Orthology cellular component
cytoplasm Orthology cellular component
lysosomal membrane Blast cellular component
endosome Orthology cellular component
early endosome Blast cellular component
endoplasmic reticulum Blast cellular component
endoplasmic reticulum membrane Blast cellular component
cytosol Orthology cellular component
plasma membrane Orthology cellular component
integral component of plasma membrane Blast cellular component
apoptotic process Orthology biological process
defense response Orthology biological process
signal transduction Orthology biological process
cell surface receptor signaling pathway Orthology biological process
regulation of gene expression Orthology biological process
positive regulation of gene expression Orthology biological process
membrane Blast cellular component
integral component of membrane Blast cellular component
cytokine-mediated signaling pathway Orthology biological process
response to lipopolysaccharide Orthology biological process
regulation of cell proliferation Orthology biological process
identical protein binding Orthology molecular function
negative regulation of apoptotic process Orthology biological process
innate immune response Orthology biological process
cellular response to stress Orthology biological process
intracellular signal transduction Orthology biological process
protein phosphorylation Orthology biological process
intracellular organelle part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
organelle Orthology cellular component
postsynapse Orthology cellular component
neuron part Orthology cellular component
immune response Orthology biological process
cellular response to organic substance Orthology biological process
response to molecule of bacterial origin Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
positive regulation of signal transduction Orthology biological process
response to bacterium Orthology biological process
mRNA catabolic process Orthology biological process
cell development Orthology biological process
cell migration Orthology biological process

GO (Orthology)

48 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
toll-like receptor signaling pathway Hs biological process
immune system process Hs biological process
MyD88-dependent toll-like receptor signaling pathway Hs biological process
receptor binding Hs molecular function
Toll binding Hs molecular function
death receptor binding Hs molecular function
interleukin-1 receptor binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
plasma membrane Hs cellular component
apoptotic process Hs biological process
inflammatory response Hs biological process
signal transduction Hs biological process
cell surface receptor signaling pathway Hs biological process
JNK cascade Hs biological process
Toll signaling pathway Hs biological process
response to virus Hs biological process
endosome membrane Hs cellular component
regulation of gene expression Hs biological process
positive regulation of gene expression Hs biological process
postsynaptic density Hs cellular component
immunoglobulin mediated immune response Hs biological process
cytokine-mediated signaling pathway Hs biological process
lipopolysaccharide-mediated signaling pathway Hs biological process
positive regulation of type I interferon production Hs biological process
response to peptidoglycan Hs biological process
response to lipopolysaccharide Hs biological process
toll-like receptor 9 signaling pathway Hs biological process
Toll-like receptor binding Hs molecular function
regulation of cell proliferation Hs biological process
identical protein binding Hs molecular function
negative regulation of apoptotic process Hs biological process
positive regulation of I-kappaB kinase/NF-kappaB signaling Hs biological process
protein self-association Hs molecular function
negative regulation of growth of symbiont in host Hs biological process
innate immune response Hs biological process
positive regulation of JNK cascade Hs biological process
regulation of inflammatory response Hs biological process
defense response to Gram-positive bacterium Hs biological process
positive regulation of NF-kappaB transcription factor activity Hs biological process
interleukin-1-mediated signaling pathway Hs biological process
3'-UTR-mediated mRNA stabilization Hs biological process
TIR domain binding Hs molecular function
cellular response to mechanical stimulus Hs biological process
establishment of endothelial intestinal barrier Hs biological process
regulation of neutrophil migration Hs biological process

GO (Blast)

30 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
Golgi membrane Hs cellular component 43.1 3.06e-04
RNA binding Hs molecular function 43.1 3.06e-04
double-stranded RNA binding Hs molecular function 43.1 3.06e-04
receptor activity Hs molecular function 43.1 3.06e-04
transmembrane signaling receptor activity Hs molecular function 43.1 3.06e-04
receptor binding Hs molecular function 113 2.13e-28
Toll binding Hs molecular function 113 2.13e-28
death receptor binding Hs molecular function 113 2.13e-28
interleukin-1 receptor binding Hs molecular function 113 2.13e-28
protein binding Hs molecular function 113 2.13e-28
intracellular Hs cellular component 43.1 3.06e-04
nucleus Hs cellular component 113 2.13e-28
cytoplasm Hs cellular component 113 2.13e-28
lysosomal membrane Hs cellular component 43.1 3.06e-04
endosome Hs cellular component 43.1 3.06e-04
early endosome Hs cellular component 43.1 3.06e-04
endoplasmic reticulum Hs cellular component 43.1 3.06e-04
endoplasmic reticulum membrane Hs cellular component 43.1 3.06e-04
cytosol Hs cellular component 113 2.13e-28
plasma membrane Hs cellular component 113 2.13e-28
integral component of plasma membrane Hs cellular component 43.1 3.06e-04
endosome membrane Hs cellular component 113 2.13e-28
postsynaptic density Hs cellular component 113 2.13e-28
membrane Hs cellular component 44.3 1.12e-04
integral component of membrane Hs cellular component 44.3 1.12e-04
Toll-like receptor binding Hs molecular function 113 2.13e-28
endolysosome membrane Hs cellular component 43.1 3.06e-04
identical protein binding Hs molecular function 113 2.13e-28
protein self-association Hs molecular function 113 2.13e-28
TIR domain binding Hs molecular function 113 2.13e-28

GO (InterProScan)

5 results

GO Term Analysis Type e-value
MyD88-dependent toll-like receptor signaling pathway PANTHER biological process 1.7E-34
protein binding Pfam molecular function 6.3E-11
signal transduction Pfam biological process 6.3E-11
positive regulation of I-kappaB kinase/NF-kappaB signaling PANTHER biological process 1.7E-34
TIR domain binding PANTHER molecular function 1.7E-34