Aniseed - Gene card

Gene 'Boleac.CG.SB_v3.S342...' >
Gene 'Phmamm.CG.MTP2014.S6...'

Gene Card

Best human hits

AL109827.1; NFS1; SCLY

Species

P.mammillata

Unique Gene ID

Phmamm.g00011049

Gene Model ID

Phmamm.CG.MTP2014.S664.g11049

Location

S664:23796..30713

Transcript Models and Sequences

Phmamm.CG.MTP2014.S664.g11049.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Aldolase_II/adducin_N_sf	SUPERFAMILY	Class II aldolase/adducin N-terminal domain superfamily
PyrdxlP-dep_Trfase_major	Gene3D	Pyridoxal phosphate-dependent transferase, major domain
PyrdxlP-dep_Trfase_dom1	Gene3D	Pyridoxal phosphate-dependent transferase domain 1
Aminotrans_V_dom	Pfam	Aminotransferase class V domain
Aldolase_II/adducin_N_sf	Gene3D	Class II aldolase/adducin N-terminal domain superfamily
PyrdxlP-dep_Trfase	SUPERFAMILY	Pyridoxal phosphate-dependent transferase

GOSlim

19 results

GO Term	Annotation Origin	Type
catalytic activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
mitochondrial matrix	Blast	cellular component
cytosol	Orthology	cellular component
transferase activity	Orthology	molecular function
protein homodimerization activity	Orthology	molecular function
metal ion binding	Blast	molecular function
cellular metabolic process	Orthology	biological process
small molecule binding	Orthology	molecular function
anion binding	Orthology	molecular function
organic cyclic compound binding	Orthology	molecular function
heterocyclic compound binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
coenzyme binding	Blast	molecular function
cofactor binding	Blast	molecular function

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
catalytic activity	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cellular amino acid metabolic process	Hs	biological process
selenocysteine lyase activity	Hs	molecular function
amino acid binding	Hs	molecular function
transferase activity	Hs	molecular function
lyase activity	Hs	molecular function
protein homodimerization activity	Hs	molecular function
vitamin B6 binding	Hs	molecular function
catalytic complex	Hs	cellular component

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
catalytic activity	Hs	molecular function	349	1.72e-114
protein binding	Hs	molecular function	349	1.72e-114
nucleus	Hs	cellular component	210	3.49e-61
nucleoplasm	Hs	cellular component	210	3.49e-61
cytoplasm	Hs	cellular component	349	1.72e-114
mitochondrion	Hs	cellular component	210	3.49e-61
mitochondrial matrix	Hs	cellular component	210	3.49e-61
cytosol	Hs	cellular component	349	1.72e-114
selenocysteine lyase activity	Hs	molecular function	349	1.72e-114
amino acid binding	Hs	molecular function	349	1.72e-114
transferase activity	Hs	molecular function	349	1.72e-114
lyase activity	Hs	molecular function	349	1.72e-114
pyridoxal phosphate binding	Hs	molecular function	210	3.49e-61
cysteine desulfurase activity	Hs	molecular function	210	3.49e-61
protein homodimerization activity	Hs	molecular function	349	1.72e-114
metal ion binding	Hs	molecular function	210	3.49e-61
iron-sulfur cluster binding	Hs	molecular function	210	3.49e-61
vitamin B6 binding	Hs	molecular function	349	1.72e-114
catalytic complex	Hs	cellular component	349	1.72e-114

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
catalytic activity	Gene3D	molecular function	5.3E-128