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GENE CARD

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Gene Card

Best human hits

EIF4A1; EIF4A2; EIF4A3

Species

P.mammillata

Unique Gene ID

Phmamm.g00011014

Gene Model ID

Phmamm.CG.MTP2014.S660.g11014

Location

S660:74588..78358

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S660.g11014.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

40 results

AHC0AAA11YH21

Plate: Plate_11_H21

AHC0AAA12YI10

Plate: Plate_12_I10

AHC0AAA20YK05

Plate: Plate_20_K05

AHC0AAA21YA04

Plate: Plate_21_A04

AHC0AAA24YP20

Plate: Plate_24_P20

AHC0AAA32YP06

Plate: Plate_32_P06

AHC0AAA36YN10

Plate: Plate_36_N10

AHC0AAA38YE14

Plate: Plate_38_E14

AHC0AAA68YN13

Plate: Plate_68_N13

AHC0AAA73YG21

Plate: Plate_73_G21

AHC0AAA73YL11

Plate: Plate_73_L11

AHC0AAA105YI06

Plate: Plate_105_I06

AHC0AAA110YC02

Plate: Plate_110_C02

AHC0AAA118YP09

Plate: Plate_118_P09

AHC0AAA126YC14

Plate: Plate_126_C14

AHC0AAA142YC21

Plate: Plate_142_C21

AHC0AAA143YJ02

Plate: Plate_143_J02

AHC0AAA145YJ05

Plate: Plate_145_J05

AHC0AAA85YL24

Plate: Plate_85_L24

AHC0AAA88YM12

Plate: Plate_88_M12

AHC0AAA92YP09

Plate: Plate_92_P09

AHC0AAA97YO16

Plate: Plate_97_O16

AHC0AAA171YM10

Plate: Plate_171_M10

AHC0AAA177YI02

Plate: Plate_177_I02

AHC0AAA185YD01

Plate: Plate_185_D01

AHC0AAA192YF01

Plate: Plate_192_F01

AHC0AAA198YM12

Plate: Plate_198_M12

AHC0AAA217YJ21

Plate: Plate_217_J21

AHC0AAA228YE01

Plate: Plate_228_E01

AHC0AAA230YM24

Plate: Plate_230_M24

AHC0AAA246YM16

Plate: Plate_246_M16

AHC0AAA248YN09

Plate: Plate_248_N09

AHC0AAA254YF07

Plate: Plate_254_F07

AHC0AAA255YN15

Plate: Plate_255_N15

AHC0AAA264YI01

Plate: Plate_264_I01

AHC0AAA268YB19

Plate: Plate_268_B19

AHC0AAA268YM06

Plate: Plate_268_M06

AHC0AAA269YG07

Plate: Plate_269_G07

AHC0AAA38YG16

Plate: Plate_38_G16

AHC0AAA92YB07

Plate: Plate_92_B07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_C SMART Helicase, C-terminal
Helicase_C Pfam Helicase, C-terminal
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain

GOSlim

41 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
mRNA splicing, via spliceosome Orthology biological process
nucleic acid binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
mRNA processing Orthology biological process
translational initiation Blast biological process
RNA splicing Orthology biological process
regulation of gene expression Orthology biological process
negative regulation of gene expression Orthology biological process
membrane Orthology cellular component
nuclear speck Orthology cellular component
hydrolase activity Orthology molecular function
neuronal cell body Orthology cellular component
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
nuclear-transcribed mRNA catabolic process Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
RNA processing Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
nervous system process Orthology biological process
RNA metabolic process Orthology biological process
response to organic substance Orthology biological process
macromolecular complex binding Orthology molecular function
positive regulation of gene expression Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
cytoplasmic part Blast cellular component

GO (Orthology)

45 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
nuclear-transcribed mRNA poly(A) tail shortening Hs biological process
mRNA splicing, via spliceosome Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
mRNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
rRNA processing Hs biological process
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
regulation of translation Hs biological process
poly(A) binding Hs molecular function
associative learning Hs biological process
RNA splicing Hs biological process
RNA secondary structure unwinding Hs biological process
negative regulation of gene expression Hs biological process
response to organic cyclic compound Hs biological process
membrane Hs cellular component
nuclear speck Hs cellular component
hydrolase activity Hs molecular function
negative regulation of translation Hs biological process
dendrite Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
mRNA 3'-end processing Hs biological process
exon-exon junction complex Hs cellular component
selenocysteine insertion sequence binding Hs molecular function
RNA stem-loop binding Hs molecular function
ribonucleoprotein complex binding Hs molecular function
neuronal cell body Hs cellular component
positive regulation of translation Hs biological process
embryonic cranial skeleton morphogenesis Hs biological process
mRNA transport Hs biological process
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 755 0.0
RNA cap binding Hs molecular function 530 0.0
nucleic acid binding Hs molecular function 755 0.0
RNA binding Hs molecular function 755 0.0
double-stranded RNA binding Hs molecular function 530 0.0
mRNA binding Hs molecular function 755 0.0
translation initiation factor activity Hs molecular function 535 0.0
ATP-dependent RNA helicase activity Hs molecular function 755 0.0
helicase activity Hs molecular function 755 0.0
protein binding Hs molecular function 755 0.0
ATP binding Hs molecular function 755 0.0
nucleus Hs cellular component 755 0.0
nucleoplasm Hs cellular component 755 0.0
spliceosomal complex Hs cellular component 755 0.0
nucleolus Hs cellular component 755 0.0
cytoplasm Hs cellular component 755 0.0
cytosol Hs cellular component 755 0.0
translation factor activity, RNA binding Hs molecular function 530 0.0
poly(A) binding Hs molecular function 755 0.0
membrane Hs cellular component 755 0.0
eukaryotic translation initiation factor 4F complex Hs cellular component 535 0.0
nuclear speck Hs cellular component 755 0.0
hydrolase activity Hs molecular function 755 0.0
ATPase activity Hs molecular function 535 0.0
dendrite Hs cellular component 755 0.0
intracellular ribonucleoprotein complex Hs cellular component 755 0.0
exon-exon junction complex Hs cellular component 755 0.0
selenocysteine insertion sequence binding Hs molecular function 755 0.0
RNA stem-loop binding Hs molecular function 755 0.0
ribonucleoprotein complex binding Hs molecular function 755 0.0
neuronal cell body Hs cellular component 755 0.0
perinuclear region of cytoplasm Hs cellular component 535 0.0
extracellular exosome Hs cellular component 530 0.0
catalytic step 2 spliceosome Hs cellular component 755 0.0

GO (InterProScan)

2 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 3.7E-43
ATP binding Pfam molecular function 3.7E-43