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GENE CARD

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Gene Card

Best human hits

PAX3; PAX6; PAX7

Species

P.mammillata

Unique Gene ID

Phmamm.g00010911

Gene Model ID

Phmamm.CG.MTP2014.S649.g10911

Location

S649:32974..36772

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S649.g10911.01.t
Phmamm.CG.MTP2014.S649.g10911.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

2 results

AHC0AAA28YA11

Plate: Plate_28_A11

AHC0AAA111YN12

Plate: Plate_111_N12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
Paired_dom ProSitePatterns Paired domain
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
Homeobox_dom ProSiteProfiles Homeobox domain
Homeobox_dom CDD Homeobox domain
Paired_dom Pfam Paired domain
WH-like_DNA-bd_sf Gene3D Winged helix-like DNA-binding domain superfamily
Paired_dom SMART Paired domain
Homeobox_dom Pfam Homeobox domain
Homeobox_dom SMART Homeobox domain
Paired_dom PRINTS Paired domain
Paired_dom ProSiteProfiles Paired domain
Paired_dom CDD Paired domain

GOSlim

26 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Blast biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
ubiquitin-protein transferase activity Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
transcription factor binding Blast molecular function
membrane Blast cellular component
integral component of membrane Blast cellular component
protein kinase binding Blast molecular function
ubiquitin protein ligase binding Blast molecular function
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
nuclear chromatin Hs cellular component 370 6.63e-125
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 370 6.63e-125
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function 370 6.63e-125
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 370 6.63e-125
transcription factor activity, RNA polymerase II core promoter sequence-specific Hs molecular function 253 1.54e-78
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 370 6.63e-125
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 370 6.63e-125
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 370 6.63e-125
DNA binding Hs molecular function 370 6.63e-125
chromatin binding Hs molecular function 370 6.63e-125
transcription factor activity, sequence-specific DNA binding Hs molecular function 370 6.63e-125
ubiquitin-protein transferase activity Hs molecular function 370 6.63e-125
protein binding Hs molecular function 370 6.63e-125
intracellular Hs cellular component 370 6.63e-125
nucleus Hs cellular component 370 6.63e-125
nucleoplasm Hs cellular component 370 6.63e-125
cytoplasm Hs cellular component 370 6.63e-125
cytosol Hs cellular component 370 6.63e-125
transcription factor binding Hs molecular function 370 6.63e-125
membrane Hs cellular component 370 6.63e-125
integral component of membrane Hs cellular component 370 6.63e-125
protein kinase binding Hs molecular function 370 6.63e-125
ubiquitin protein ligase binding Hs molecular function 370 6.63e-125
histone acetyltransferase binding Hs molecular function 370 6.63e-125
sequence-specific DNA binding Hs molecular function 370 6.63e-125
transcription regulatory region DNA binding Hs molecular function 370 6.63e-125
co-SMAD binding Hs molecular function 370 6.63e-125
R-SMAD binding Hs molecular function 370 6.63e-125
HMG box domain binding Hs molecular function 370 6.63e-125

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding SMART molecular function 1.0E-88
regulation of transcription, DNA-templated SMART biological process 1.0E-88
sequence-specific DNA binding ProSitePatterns molecular function

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