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Gene Card

Best human hits

TRAF4; TRAF5; TRAF6

Species

P.mammillata

Unique Gene ID

Phmamm.g00010607

Gene Model ID

Phmamm.CG.MTP2014.S617.g10607

Location

S617:66024..77401

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S617.g10607.01.t
Phmamm.CG.MTP2014.S617.g10607.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

1 result

AHC0AAA103YC17

Plate: Plate_103_C17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Znf_TRAF ProSiteProfiles Zinc finger, TRAF-type
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
TRAF-like SUPERFAMILY TRAF-like
Znf_RING SMART Zinc finger, RING-type
Znf_RING ProSiteProfiles Zinc finger, RING-type
Znf_TRAF Pfam Zinc finger, TRAF-type
Znf_RING_CS ProSitePatterns Zinc finger, RING-type, conserved site

GOSlim

32 results

GO Term Annotation Origin Type
DNA binding Blast molecular function
ubiquitin-protein transferase activity Blast molecular function
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
cytoplasm Blast cellular component
centrosome Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
zinc ion binding Blast molecular function
membrane Blast cellular component
transferase activity Blast molecular function
protein kinase binding Blast molecular function
cell junction Blast cellular component
ubiquitin protein ligase binding Blast molecular function
macromolecular complex Blast cellular component
identical protein binding Blast molecular function
metal ion binding Blast molecular function
protein N-terminus binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
receptor binding Blast molecular function
intracellular non-membrane-bounded organelle Blast cellular component
cell periphery Blast cellular component
cytoplasmic part Blast cellular component
plasma membrane part Blast cellular component
intracellular organelle part Blast cellular component
whole membrane Blast cellular component
endosome Blast cellular component
bounding membrane of organelle Blast cellular component
enzyme binding Blast molecular function
integral component of plasma membrane Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

35 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
DNA binding Hs molecular function 105 4.69e-25
ubiquitin-protein transferase activity Hs molecular function 166 9.66e-47
tumor necrosis factor receptor binding Hs molecular function 166 9.66e-47
protein binding Hs molecular function 166 9.66e-47
intracellular Hs cellular component 105 4.69e-25
nucleus Hs cellular component 166 9.66e-47
cytoplasm Hs cellular component 166 9.66e-47
lipid droplet Hs cellular component 166 9.66e-47
centrosome Hs cellular component 129 3.76e-33
cytosol Hs cellular component 166 9.66e-47
cytoskeleton Hs cellular component 105 4.69e-25
plasma membrane Hs cellular component 166 9.66e-47
bicellular tight junction Hs cellular component 105 4.69e-25
cell cortex Hs cellular component 166 9.66e-47
zinc ion binding Hs molecular function 166 9.66e-47
cytoplasmic side of plasma membrane Hs cellular component 166 9.66e-47
endosome membrane Hs cellular component 166 9.66e-47
membrane Hs cellular component 105 4.69e-25
transferase activity Hs molecular function 166 9.66e-47
protein kinase binding Hs molecular function 166 9.66e-47
cell junction Hs cellular component 105 4.69e-25
mitogen-activated protein kinase kinase kinase binding Hs molecular function 166 9.66e-47
ubiquitin conjugating enzyme binding Hs molecular function 166 9.66e-47
ubiquitin protein ligase binding Hs molecular function 166 9.66e-47
thioesterase binding Hs molecular function 166 9.66e-47
macromolecular complex Hs cellular component 166 9.66e-47
CD40 receptor complex Hs cellular component 166 9.66e-47
identical protein binding Hs molecular function 166 9.66e-47
histone deacetylase binding Hs molecular function 166 9.66e-47
protein kinase B binding Hs molecular function 166 9.66e-47
metal ion binding Hs molecular function 166 9.66e-47
protein N-terminus binding Hs molecular function 166 9.66e-47
perinuclear region of cytoplasm Hs cellular component 166 9.66e-47
WW domain binding Hs molecular function 105 4.69e-25
ubiquitin protein ligase activity Hs molecular function 166 9.66e-47

GO (InterProScan)

2 results

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.5E-6
zinc ion binding Pfam molecular function 2.1E-8

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