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GENE CARD

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Gene Card

Best human hits

FBN1; FBN2; FBN3

Species

P.mammillata

Unique Gene ID

Phmamm.g00010507

Gene Model ID

Phmamm.CG.MTP2014.S606.g10507

Location

S606:58267..77110

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S606.g10507.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

20 results

IPR Term Analysis Definition
EGF-like_CS ProSitePatterns EGF-like, conserved site
Ig-like_fold Gene3D Immunoglobulin-like fold
EGF-like_Ca-bd_dom SMART EGF-like calcium-binding domain
CUB_dom CDD CUB domain
EGF-type_Asp/Asn_hydroxyl_site ProSitePatterns EGF-type aspartate/asparagine hydroxylation site
EGF-like_dom ProSiteProfiles EGF-like domain
FN3_dom Pfam Fibronectin type III
CUB_dom ProSiteProfiles CUB domain
FN3_dom CDD Fibronectin type III
FN3_sf SUPERFAMILY Fibronectin type III superfamily
FN3_dom SMART Fibronectin type III
FN3_dom ProSiteProfiles Fibronectin type III
EGF-like_dom SMART EGF-like domain
Growth_fac_rcpt_cys_sf SUPERFAMILY Growth factor receptor cysteine-rich domain superfamily
EGF_dom Pfam EGF domain
EGF_Ca-bd_CS ProSitePatterns EGF-like calcium-binding, conserved site
Sperma_CUB_dom_sf SUPERFAMILY Spermadhesin, CUB domain superfamily
EGF-like_dom Pfam EGF-like domain
Sperma_CUB_dom_sf Gene3D Spermadhesin, CUB domain superfamily
EGF-like_Ca-bd_dom Pfam EGF-like calcium-binding domain

GOSlim

17 results

GO Term Annotation Origin Type
integrin binding Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endoplasmic reticulum lumen Blast cellular component
identical protein binding Blast molecular function
macromolecular complex binding Blast molecular function
extracellular exosome Blast cellular component
extracellular region part Blast cellular component
receptor binding Blast molecular function
molecular function regulator Blast molecular function
regulation of signal transduction Blast biological process
signaling receptor activity Blast molecular function
structural molecule activity Blast molecular function
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
microfibril Hs cellular component 178 1.89e-44
integrin binding Hs molecular function 178 1.89e-44
hormone activity Hs molecular function 178 1.89e-44
extracellular matrix structural constituent Hs molecular function 178 1.89e-44
calcium ion binding Hs molecular function 178 1.89e-44
protein binding Hs molecular function 178 1.89e-44
extracellular region Hs cellular component 178 1.89e-44
proteinaceous extracellular matrix Hs cellular component 178 1.89e-44
basement membrane Hs cellular component 178 1.89e-44
extracellular space Hs cellular component 178 1.89e-44
endoplasmic reticulum lumen Hs cellular component 178 1.89e-44
heparin binding Hs molecular function 178 1.89e-44
extracellular matrix constituent conferring elasticity Hs molecular function 178 1.89e-44
extracellular matrix Hs cellular component 178 1.89e-44
identical protein binding Hs molecular function 178 1.89e-44
macromolecular complex binding Hs molecular function 178 1.89e-44
extracellular exosome Hs cellular component 178 1.89e-44

GO (InterProScan)

2 results

GO Term Analysis Type e-value
calcium ion binding Pfam molecular function 5.3E-9
protein binding SUPERFAMILY molecular function 3.3E-31