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GENE CARD

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Gene Card

Best human hits

RREB1; ZKSCAN8; ZNF641

Species

P.mammillata

Unique Gene ID

Phmamm.g00010450

Gene Model ID

Phmamm.CG.MTP2014.S600.g10450

Location

S600:55715..75206

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

36 results

AHC0AAA10YA02

Plate: Plate_10_A02

AHC0AAA14YM05

Plate: Plate_14_M05

AHC0AAA8YA05

Plate: Plate_8_A05

AHC0AAA44YJ09

Plate: Plate_44_J09

AHC0AAA51YC22

Plate: Plate_51_C22

AHC0AAA59YF21

Plate: Plate_59_F21

AHC0AAA62YO02

Plate: Plate_62_O02

AHC0AAA63YO10

Plate: Plate_63_O10

AHC0AAA76YC14

Plate: Plate_76_C14

AHC0AAA77YN07

Plate: Plate_77_N07

AHC0AAA105YM23

Plate: Plate_105_M23

AHC0AAA106YD04

Plate: Plate_106_D04

AHC0AAA110YK20

Plate: Plate_110_K20

AHC0AAA112YG23

Plate: Plate_112_G23

AHC0AAA128YC03

Plate: Plate_128_C03

AHC0AAA149YK17

Plate: Plate_149_K17

AHC0AAA155YO08

Plate: Plate_155_O08

AHC0AAA84YE24

Plate: Plate_84_E24

AHC0AAA88YC09

Plate: Plate_88_C09

AHC0AAA91YI20

Plate: Plate_91_I20

AHC0AAA96YL22

Plate: Plate_96_L22

AHC0AAA98YB09

Plate: Plate_98_B09

AHC0AAA106YD02

Plate: Plate_106_D02

AHC0AAA162YJ07

Plate: Plate_162_J07

AHC0AAA170YG06

Plate: Plate_170_G06

AHC0AAA175YG05

Plate: Plate_175_G05

AHC0AAA175YI12

Plate: Plate_175_I12

AHC0AAA210YL03

Plate: Plate_210_L03

AHC0AAA218YD13

Plate: Plate_218_D13

AHC0AAA233YM06

Plate: Plate_233_M06

AHC0AAA239YJ11

Plate: Plate_239_J11

AHC0AAA256YP13

Plate: Plate_256_P13

AHC0AAA257YP15

Plate: Plate_257_P15

AHC0AAA261YD07

Plate: Plate_261_D07

AHC0AAA269YI17

Plate: Plate_269_I17

AHC0AAA98YD11

Plate: Plate_98_D11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type SMART Zinc finger C2H2-type
Znf_C2H2_type Pfam Zinc finger C2H2-type
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily

GOSlim

16 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Blast molecular function
nucleic acid binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
nuclear body Blast cellular component
nuclear speck Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
nucleolus Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 98.2 2.17e-20
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function 98.2 2.17e-20
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 98.2 2.17e-20
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 98.2 2.17e-20
fibrillar center Hs cellular component 98.2 2.17e-20
nucleic acid binding Hs molecular function 98.2 2.17e-20
DNA binding Hs molecular function 98.2 2.17e-20
transcription factor activity, sequence-specific DNA binding Hs molecular function 98.2 2.17e-20
intracellular Hs cellular component 60.5 4.83e-09
nucleus Hs cellular component 98.2 2.17e-20
nucleoplasm Hs cellular component 60.1 5.12e-09
cytoplasm Hs cellular component 98.2 2.17e-20
cytosol Hs cellular component 60.1 5.12e-09
nuclear body Hs cellular component 98.2 2.17e-20
nuclear speck Hs cellular component 98.2 2.17e-20
metal ion binding Hs molecular function 98.2 2.17e-20
extracellular exosome Hs cellular component 98.2 2.17e-20

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 4.6E-4