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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S5...'

Gene Card

Best human hits

RPL8

Species

P.mammillata

Unique Gene ID

Phmamm.g00002102

Gene Model ID

Phmamm.CG.MTP2014.S58.g02102

Location

S58:170696..173850

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S58.g02102.01.t
Phmamm.CG.MTP2014.S58.g02102.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

25 results

AHC0AAA11YF12

Plate: Plate_11_F12

AHC0AAA17YG20

Plate: Plate_17_G20

AHC0AAA25YM01

Plate: Plate_25_M01

AHC0AAA54YC16

Plate: Plate_54_C16

AHC0AAA69YK24

Plate: Plate_69_K24

AHC0AAA104YK18

Plate: Plate_104_K18

AHC0AAA109YM09

Plate: Plate_109_M09

AHC0AAA120YH23

Plate: Plate_120_H23

AHC0AAA151YH11

Plate: Plate_151_H11

AHC0AAA81YK13

Plate: Plate_81_K13

AHC0AAA95YA16

Plate: Plate_95_A16

AHC0AAA95YG08

Plate: Plate_95_G08

AHC0AAA95YK08

Plate: Plate_95_K08

AHC0AAA165YA24

Plate: Plate_165_A24

AHC0AAA210YN10

Plate: Plate_210_N10

AHC0AAA215YK11

Plate: Plate_215_K11

AHC0AAA222YJ21

Plate: Plate_222_J21

AHC0AAA227YB16

Plate: Plate_227_B16

AHC0AAA239YB23

Plate: Plate_239_B23

AHC0AAA243YC04

Plate: Plate_243_C04

AHC0AAA257YM11

Plate: Plate_257_M11

AHC0AAA259YC07

Plate: Plate_259_C07

AHC0AAA263YF16

Plate: Plate_263_F16

AHC0AAA266YI24

Plate: Plate_266_I24

AHC0AAA54YC14

Plate: Plate_54_C14

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
Rbsml_prot_L2_RNA-bd_dom Pfam Ribosomal Proteins L2, RNA binding domain
Ribosomal_L2_C Pfam Ribosomal protein L2, C-terminal
Ribosomal_L2_C SMART Ribosomal protein L2, C-terminal
Ribosomal_L2_dom3 Gene3D Ribosomal protein L2, domain 3
Ribosomal_L2_CS ProSitePatterns Ribosomal protein L2, conserved site
Translation_prot_SH3-like_sf SUPERFAMILY Translation protein SH3-like domain superfamily
Ribosomal_L2 PIRSF Ribosomal protein L2
NA-bd_OB-fold SUPERFAMILY Nucleic acid-binding, OB-fold
Rib_L2_dom2 Gene3D Ribosomal protein L2, domain 2
Ribosomal_L2 SMART Ribosomal protein L2
Ribosomal_L2 PANTHER Ribosomal protein L2

GOSlim

13 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
RNA binding Orthology molecular function
structural constituent of ribosome Orthology molecular function
intracellular Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
ribosome Orthology cellular component
focal adhesion Orthology cellular component
translational initiation Orthology biological process
SRP-dependent cotranslational protein targeting to membrane Orthology biological process
membrane Orthology cellular component
RNA processing Orthology biological process
intracellular organelle part Orthology cellular component

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
cytoplasmic translation Hs biological process
RNA binding Hs molecular function
structural constituent of ribosome Hs molecular function
intracellular Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
ribosome Hs cellular component
focal adhesion Hs cellular component
rRNA processing Hs biological process
translation Hs biological process
translational initiation Hs biological process
SRP-dependent cotranslational protein targeting to membrane Hs biological process
large ribosomal subunit Hs cellular component
membrane Hs cellular component
rRNA binding Hs molecular function
cytosolic large ribosomal subunit Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
polysomal ribosome Hs cellular component
5.8S rRNA binding Hs molecular function

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 405 6.65e-145
structural constituent of ribosome Hs molecular function 405 6.65e-145
intracellular Hs cellular component 405 6.65e-145
cytoplasm Hs cellular component 405 6.65e-145
cytosol Hs cellular component 405 6.65e-145
ribosome Hs cellular component 405 6.65e-145
focal adhesion Hs cellular component 405 6.65e-145
large ribosomal subunit Hs cellular component 405 6.65e-145
membrane Hs cellular component 405 6.65e-145
rRNA binding Hs molecular function 405 6.65e-145
cytosolic large ribosomal subunit Hs cellular component 405 6.65e-145
intracellular ribonucleoprotein complex Hs cellular component 405 6.65e-145
polysomal ribosome Hs cellular component 405 6.65e-145
5.8S rRNA binding Hs molecular function 405 6.65e-145

GO (InterProScan)

4 results

GO Term Analysis Type e-value
structural constituent of ribosome PANTHER molecular function 2.9E-136
intracellular PANTHER cellular component 2.9E-136
ribosome PANTHER cellular component 2.9E-136
translation PANTHER biological process 2.9E-136

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