Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S5...'

Gene Card

Best human hits

DEAF1; SAMD11; SAMD7

Species

P.mammillata

Unique Gene ID

Phmamm.g00010210

Gene Model ID

Phmamm.CG.MTP2014.S575.g10210

Location

S575:60792..70413

Transcript Models and Sequences

Phmamm.CG.MTP2014.S575.g10210.01.t
Phmamm.CG.MTP2014.S575.g10210.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

5 results

AHC0AAA215YB07

Plate: Plate_215_B07

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
GMEB1/2	PANTHER	Glucocorticoid modulatory element-binding protein 1/2
SAND-like_dom_sf	SUPERFAMILY	SAND-like domain superfamily
SAND_dom	SMART	SAND domain
SAM/pointed_sf	SUPERFAMILY	Sterile alpha motif/pointed domain superfamily
SAM	ProSiteProfiles	Sterile alpha motif domain
SAND_dom	ProSiteProfiles	SAND domain
SAND_dom	Pfam	SAND domain
SAND-like_dom_sf	Gene3D	SAND-like domain superfamily
SAM	Pfam	Sterile alpha motif domain
SAM	SMART	Sterile alpha motif domain

GOSlim

15 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Blast	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Orthology	molecular function
extracellular region	Blast	cellular component
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
negative regulation of gene expression	Orthology	biological process
metal ion binding	Blast	molecular function
transcription coactivator activity	InterProScan	molecular function
nucleolus	Blast	cellular component
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
negative regulation of gene expression	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	70.5	2.61e-12
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	70.5	2.61e-12
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	70.5	2.61e-12
fibrillar center	Hs	cellular component	70.5	2.61e-12
DNA binding	Hs	molecular function	85.9	5.83e-17
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	70.5	2.61e-12
protein binding	Hs	molecular function	85.9	5.83e-17
extracellular region	Hs	cellular component	70.5	2.61e-12
nucleus	Hs	cellular component	85.9	5.83e-17
transcription factor complex	Hs	cellular component	70.5	2.61e-12
cytoplasm	Hs	cellular component	74.3	1.06e-13
metal ion binding	Hs	molecular function	70.5	2.61e-12

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	1.6E-23
protein binding	Pfam	molecular function	4.0E-15
nucleus	PANTHER	cellular component	5.4E-60
transcription coactivator activity	PANTHER	molecular function	5.4E-60