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GENE CARD

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Gene Card

Best human hits

RABGEF1; ZFAND5; ZFAND6

Species

P.mammillata

Unique Gene ID

Phmamm.g00009751

Gene Model ID

Phmamm.CG.MTP2014.S524.g09751

Location

S524:46146..51241

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S524.g09751.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

51 results

AHC0AAA10YL06

Plate: Plate_10_L06

AHC0AAA2YM11

Plate: Plate_2_M11

AHC0AAA20YA17

Plate: Plate_20_A17

AHC0AAA9YL05

Plate: Plate_9_L05

AHC0AAA37YI08

Plate: Plate_37_I08

AHC0AAA38YI16

Plate: Plate_38_I16

AHC0AAA40YO02

Plate: Plate_40_O02

AHC0AAA42YP20

Plate: Plate_42_P20

AHC0AAA54YA07

Plate: Plate_54_A07

AHC0AAA58YG04

Plate: Plate_58_G04

AHC0AAA72YO12

Plate: Plate_72_O12

AHC0AAA73YG22

Plate: Plate_73_G22

AHC0AAA80YH03

Plate: Plate_80_H03

AHC0AAA100YB21

Plate: Plate_100_B21

AHC0AAA111YA06

Plate: Plate_111_A06

AHC0AAA111YP10

Plate: Plate_111_P10

AHC0AAA117YH22

Plate: Plate_117_H22

AHC0AAA120YI11

Plate: Plate_120_I11

AHC0AAA132YL24

Plate: Plate_132_L24

AHC0AAA133YP08

Plate: Plate_133_P08

AHC0AAA148YO14

Plate: Plate_148_O14

AHC0AAA154YF18

Plate: Plate_154_F18

AHC0AAA81YE22

Plate: Plate_81_E22

AHC0AAA85YC24

Plate: Plate_85_C24

AHC0AAA91YK07

Plate: Plate_91_K07

AHC0AAA97YJ05

Plate: Plate_97_J05

AHC0AAA133YP06

Plate: Plate_133_P06

AHC0AAA161YD24

Plate: Plate_161_D24

AHC0AAA163YK14

Plate: Plate_163_K14

AHC0AAA164YF19

Plate: Plate_164_F19

AHC0AAA200YH23

Plate: Plate_200_H23

AHC0AAA201YJ14

Plate: Plate_201_J14

AHC0AAA203YD10

Plate: Plate_203_D10

AHC0AAA204YO08

Plate: Plate_204_O08

AHC0AAA218YF07

Plate: Plate_218_F07

AHC0AAA221YG23

Plate: Plate_221_G23

AHC0AAA224YJ21

Plate: Plate_224_J21

AHC0AAA226YN10

Plate: Plate_226_N10

AHC0AAA231YE23

Plate: Plate_231_E23

AHC0AAA233YK16

Plate: Plate_233_K16

AHC0AAA234YN02

Plate: Plate_234_N02

AHC0AAA236YB15

Plate: Plate_236_B15

AHC0AAA249YE14

Plate: Plate_249_E14

AHC0AAA250YO20

Plate: Plate_250_O20

AHC0AAA252YC13

Plate: Plate_252_C13

AHC0AAA255YH23

Plate: Plate_255_H23

AHC0AAA257YM15

Plate: Plate_257_M15

AHC0AAA262YD06

Plate: Plate_262_D06

AHC0AAA266YO16

Plate: Plate_266_O16

AHC0AAA38YI14

Plate: Plate_38_I14

AHC0AAA54YA05

Plate: Plate_54_A05

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Znf_A20 SMART Zinc finger, A20-type
Znf_A20 Pfam Zinc finger, A20-type
Znf_A20 ProSiteProfiles Zinc finger, A20-type

GOSlim

29 results

GO Term Annotation Origin Type
vasculature development Orthology biological process
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleolus Blast cellular component
cytoplasm Orthology cellular component
endosome Blast cellular component
early endosome Blast cellular component
cytosol Blast cellular component
apoptotic process Orthology biological process
zinc ion binding Orthology molecular function
protein transport Orthology biological process
negative regulation of apoptotic process Orthology biological process
metal ion binding Orthology molecular function
organelle organization Orthology biological process
protein targeting Orthology biological process
establishment of protein localization to organelle Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
intracellular signal transduction Orthology biological process
regulation of signal transduction Orthology biological process
cell surface receptor signaling pathway Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
anatomical structure development Orthology biological process
head development Orthology biological process
enzyme binding Blast molecular function
molecular function regulator Blast molecular function
whole membrane Blast cellular component
intracellular organelle part Blast cellular component
bounding membrane of organelle Blast cellular component

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
vasculature development Hs biological process
DNA binding Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
protein targeting to peroxisome Hs biological process
apoptotic process Hs biological process
zinc ion binding Hs molecular function
protein transport Hs biological process
polyubiquitin modification-dependent protein binding Hs molecular function
negative regulation of apoptotic process Hs biological process
regulation of I-kappaB kinase/NF-kappaB signaling Hs biological process
metal ion binding Hs molecular function
platelet-derived growth factor receptor signaling pathway Hs biological process
skeletal system morphogenesis Hs biological process
smooth muscle tissue development Hs biological process
face development Hs biological process
cellular response to tumor necrosis factor Hs biological process

GO (Blast)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
DNA binding Hs molecular function 88.6 4.84e-22
protein binding Hs molecular function 88.6 4.84e-22
nucleolus Hs cellular component 42.0 1.07e-04
cytoplasm Hs cellular component 88.6 4.84e-22
endosome Hs cellular component 42.0 1.07e-04
early endosome Hs cellular component 42.0 1.07e-04
cytosol Hs cellular component 42.0 1.07e-04
zinc ion binding Hs molecular function 88.6 4.84e-22
Rab guanyl-nucleotide exchange factor activity Hs molecular function 42.0 1.07e-04
Rab GTPase binding Hs molecular function 42.0 1.07e-04
polyubiquitin modification-dependent protein binding Hs molecular function 87.0 2.17e-21
early endosome membrane Hs cellular component 42.0 1.07e-04
metal ion binding Hs molecular function 88.6 4.84e-22
recycling endosome Hs cellular component 42.0 1.07e-04

GO (InterProScan)

2 results

GO Term Analysis Type e-value
DNA binding Pfam molecular function 1.2E-12
zinc ion binding Pfam molecular function 1.2E-12