Aniseed - Gene card

Gene Card

Best human hits

TDRD1; TDRD15; TDRD7

Species

P.mammillata

Unique Gene ID

Phmamm.g00009724

Gene Model ID

Phmamm.CG.MTP2014.S522.g09724

Location

S522:21627..24132

Transcript Models and Sequences

Phmamm.CG.MTP2014.S522.g09724.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain
Tudor	Pfam	Tudor domain
SNase_OB-fold_sf	Gene3D	SNase-like, OB-fold superfamily
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
Tudor	ProSiteProfiles	Tudor domain
Tudor	SMART	Tudor domain

GOSlim

20 results

GO Term	Annotation Origin	Type
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
cytoplasm	Orthology	cellular component
mitochondrial matrix	Blast	cellular component
multicellular organism development	Orthology	biological process
spermatogenesis	Orthology	biological process
cell differentiation	Orthology	biological process
metal ion binding	Orthology	molecular function
protein N-terminus binding	Blast	molecular function
nucleic acid binding	InterProScan	molecular function
gamete generation	Orthology	biological process
cell development	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
cellular process	Orthology	biological process
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA metabolic process	Orthology	biological process
DNA metabolic process	Orthology	biological process
reproductive process	Orthology	biological process

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
cytoplasm	Hs	cellular component
multicellular organism development	Hs	biological process
germ cell development	Hs	biological process
spermatogenesis	Hs	biological process
cell differentiation	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
gene silencing by RNA	Hs	biological process
chromatoid body	Hs	cellular component
piRNA metabolic process	Hs	biological process
DNA methylation involved in gamete generation	Hs	biological process
P granule	Hs	cellular component
metal ion binding	Hs	molecular function
meiotic cell cycle	Hs	biological process
pi-body	Hs	cellular component

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	81.3	1.39e-15
mRNA binding	Hs	molecular function	81.3	1.39e-15
protein binding	Hs	molecular function	81.3	1.39e-15
cytoplasm	Hs	cellular component	136	1.38e-32
mitochondrial matrix	Hs	cellular component	81.3	1.39e-15
intracellular ribonucleoprotein complex	Hs	cellular component	136	1.38e-32
chromatoid body	Hs	cellular component	136	1.38e-32
ribonucleoprotein granule	Hs	cellular component	81.3	1.39e-15
P granule	Hs	cellular component	136	1.38e-32
metal ion binding	Hs	molecular function	136	1.38e-32
protein N-terminus binding	Hs	molecular function	81.3	1.39e-15
pi-body	Hs	cellular component	136	1.38e-32

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.29E-18