Aniseed - Gene card

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Genoscope Yasuo Villefranche

3 results

AHC0AAA206YO20

Plate: Plate_206_O20

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
PIN_dom	Pfam	PIN domain
Rrp44_CSD1	Pfam	Rrp44-like cold shock domain
RNase_II/R_CS	ProSitePatterns	Ribonuclease II/R, conserved site
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
PIN_dom	SMART	PIN domain
RRP44_S1	Pfam	Exosome complex exonuclease RRP44, S1 domain
PIN-like_dom_sf	SUPERFAMILY	PIN-like domain superfamily

GOSlim

25 results

GO Term	Annotation Origin	Type
magnesium ion binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
centrosome	Blast	cellular component
cytosol	Orthology	cellular component
plasma membrane	Blast	cellular component
membrane	Orthology	cellular component
hydrolase activity	Orthology	molecular function
enzyme binding	Orthology	molecular function
metal ion binding	Blast	molecular function
regulation of molecular function	Orthology	biological process
RNA metabolic process	Orthology	biological process
nuclear lumen	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular part	Orthology	cellular component
molecular function regulator	Orthology	molecular function
RNA processing	Orthology	biological process
RNA catabolic process	Orthology	biological process
mRNA catabolic process	Orthology	biological process
nuclear-transcribed mRNA catabolic process	Orthology	biological process
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
3'-5'-exoribonuclease activity	Hs	molecular function
nuclear exosome (RNase complex)	Hs	cellular component
exosome (RNase complex)	Hs	cellular component
RNA binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
exonuclease activity	Hs	molecular function
guanyl-nucleotide exchange factor activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
rRNA processing	Hs	biological process
membrane	Hs	cellular component
rRNA catabolic process	Hs	biological process
hydrolase activity	Hs	molecular function
regulation of mRNA stability	Hs	biological process
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	Hs	biological process
regulation of molecular function	Hs	biological process
CUT catabolic process	Hs	biological process
nucleic acid phosphodiester bond hydrolysis	Hs	biological process
RNA phosphodiester bond hydrolysis, exonucleolytic	Hs	biological process

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
3'-5'-exoribonuclease activity	Hs	molecular function	1061	0.0
nuclear exosome (RNase complex)	Hs	cellular component	1061	0.0
cytoplasmic exosome (RNase complex)	Hs	cellular component	472	5.09e-151
exosome (RNase complex)	Hs	cellular component	1061	0.0
magnesium ion binding	Hs	molecular function	305	2.42e-90
P-body	Hs	cellular component	305	2.42e-90
RNA binding	Hs	molecular function	1061	0.0
nuclease activity	Hs	molecular function	1061	0.0
endonuclease activity	Hs	molecular function	1061	0.0
exonuclease activity	Hs	molecular function	1061	0.0
ribonuclease activity	Hs	molecular function	305	2.42e-90
guanyl-nucleotide exchange factor activity	Hs	molecular function	1061	0.0
protein binding	Hs	molecular function	1061	0.0
nucleus	Hs	cellular component	1061	0.0
nucleoplasm	Hs	cellular component	1061	0.0
cytoplasm	Hs	cellular component	1061	0.0
centrosome	Hs	cellular component	472	5.09e-151
cytosol	Hs	cellular component	1061	0.0
polysome	Hs	cellular component	305	2.42e-90
plasma membrane	Hs	cellular component	472	5.09e-151
poly(U) RNA binding	Hs	molecular function	305	2.42e-90
membrane	Hs	cellular component	1061	0.0
hydrolase activity	Hs	molecular function	1061	0.0
enzyme binding	Hs	molecular function	472	5.09e-151
metal ion binding	Hs	molecular function	305	2.42e-90

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
RNA binding	SMART	molecular function	5.7E-136

Gene Card

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