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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S4...'

Gene Card

Best human hits

DHX16; DHX35; DHX8

Species

P.mammillata

Unique Gene ID

Phmamm.g00009437

Gene Model ID

Phmamm.CG.MTP2014.S496.g09437

Location

S496:62760..65281

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S496.g09437.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

15 results

AHC0AAA14YO07

Plate: Plate_14_O07

AHC0AAA18YI11

Plate: Plate_18_I11

AHC0AAA3YE10

Plate: Plate_3_E10

AHC0AAA43YE02

Plate: Plate_43_E02

AHC0AAA60YE11

Plate: Plate_60_E11

AHC0AAA106YG20

Plate: Plate_106_G20

AHC0AAA116YF04

Plate: Plate_116_F04

AHC0AAA119YG24

Plate: Plate_119_G24

AHC0AAA155YP01

Plate: Plate_155_P01

AHC0AAA91YG16

Plate: Plate_91_G16

AHC0AAA97YO02

Plate: Plate_97_O02

AHC0AAA106YG18

Plate: Plate_106_G18

AHC0AAA180YP24

Plate: Plate_180_P24

AHC0AAA209YO19

Plate: Plate_209_O19

AHC0AAA214YK21

Plate: Plate_214_K21

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain
DUF1605 Pfam Domain of unknown function DUF1605
Helicase_C Pfam Helicase, C-terminal
Helicase_C ProSiteProfiles Helicase, C-terminal
Helicase-assoc_dom SMART Helicase-associated domain
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
Helicase_C SMART Helicase, C-terminal
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_C CDD Helicase, C-terminal
Helicase-assoc_dom Pfam Helicase-associated domain

GOSlim

14 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
nucleic acid binding Blast molecular function
RNA binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
nuclear body Blast cellular component
hydrolase activity Blast molecular function
identical protein binding Blast molecular function
nucleoside-triphosphatase activity Blast molecular function
nuclear part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 646 0.0
nucleic acid binding Hs molecular function 529 2.40e-174
RNA binding Hs molecular function 646 0.0
RNA helicase activity Hs molecular function 494 5.68e-163
ATP-dependent RNA helicase activity Hs molecular function 646 0.0
helicase activity Hs molecular function 646 0.0
protein binding Hs molecular function 529 2.40e-174
ATP binding Hs molecular function 646 0.0
nucleus Hs cellular component 529 2.40e-174
nucleoplasm Hs cellular component 529 2.40e-174
spliceosomal complex Hs cellular component 646 0.0
cytoplasm Hs cellular component 646 0.0
nuclear body Hs cellular component 529 2.40e-174
hydrolase activity Hs molecular function 646 0.0
ATPase activity Hs molecular function 494 5.68e-163
identical protein binding Hs molecular function 529 2.40e-174
U2-type catalytic step 2 spliceosome Hs cellular component 529 2.40e-174
catalytic step 2 spliceosome Hs cellular component 646 0.0

GO (InterProScan)

1 result

GO Term Analysis Type e-value
helicase activity SMART molecular function 9.9E-23