Aniseed - Gene card

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Genoscope Yasuo Villefranche

3 results

AHC0AAA268YJ17

Plate: Plate_268_J17

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
HATPase_C_sf	SUPERFAMILY	Histidine kinase/HSP90-like ATPase superfamily
DNA_mismatch_repair_CS	ProSitePatterns	DNA mismatch repair, conserved site
DNA_mismatch_repair_C	Pfam	DNA mismatch repair protein, C-terminal
HATPase_C	CDD	Histidine kinase/HSP90-like ATPase
Ribosomal_S5_D2-typ_fold	SUPERFAMILY	Ribosomal protein S5 domain 2-type fold
DNA_mismatch_repair_fam	TIGRFAM	DNA mismatch repair protein family
Ribosomal_S5_D2-typ_fold_subgr	Gene3D	Ribosomal protein S5 domain 2-type fold, subgroup
MutL_C_sf	SUPERFAMILY	MutL, C-terminal domain superfamily
MutL_C	SMART	MutL, C-terminal, dimerisation
MutL_C	Pfam	MutL, C-terminal, dimerisation
HATPase_C_sf	Gene3D	Histidine kinase/HSP90-like ATPase superfamily
DNA_mismatch_repair_C	SMART	DNA mismatch repair protein, C-terminal

GOSlim

25 results

GO Term	Annotation Origin	Type
nucleotide binding	Blast	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Blast	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
plasma membrane	Orthology	cellular component
DNA repair	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
microtubule cytoskeleton	Orthology	cellular component
membrane	Blast	cellular component
hydrolase activity	Orthology	molecular function
system development	Orthology	biological process
immune system process	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
double-stranded DNA binding	Orthology	molecular function
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
macromolecular complex binding	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
nuclear lumen	Blast	cellular component
intracellular part	Blast	cellular component

GO (Orthology)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
DNA binding	Hs	molecular function
single-stranded DNA binding	Hs	molecular function
nuclease activity	Hs	molecular function
endonuclease activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytosol	Hs	cellular component
plasma membrane	Hs	cellular component
DNA repair	Hs	biological process
mismatch repair	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
microtubule cytoskeleton	Hs	cellular component
somatic hypermutation of immunoglobulin genes	Hs	biological process
hydrolase activity	Hs	molecular function
ATPase activity	Hs	molecular function
mismatched DNA binding	Hs	molecular function
single base insertion or deletion binding	Hs	molecular function
MutLalpha complex	Hs	cellular component
MutSalpha complex binding	Hs	molecular function
cytoplasmic ribonucleoprotein granule	Hs	cellular component
response to drug	Hs	biological process
nucleic acid phosphodiester bond hydrolysis	Hs	biological process

GO (Blast)

30 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	140	1.78e-34
condensed chromosome	Hs	cellular component	140	1.78e-34
condensed nuclear chromosome	Hs	cellular component	140	1.78e-34
synaptonemal complex	Hs	cellular component	140	1.78e-34
male germ cell nucleus	Hs	cellular component	140	1.78e-34
DNA binding	Hs	molecular function	393	1.97e-124
chromatin binding	Hs	molecular function	140	1.78e-34
single-stranded DNA binding	Hs	molecular function	393	1.97e-124
nuclease activity	Hs	molecular function	393	1.97e-124
endonuclease activity	Hs	molecular function	393	1.97e-124
protein binding	Hs	molecular function	393	1.97e-124
ATP binding	Hs	molecular function	393	1.97e-124
nucleus	Hs	cellular component	393	1.97e-124
nucleoplasm	Hs	cellular component	393	1.97e-124
chromosome	Hs	cellular component	140	1.78e-34
chiasma	Hs	cellular component	140	1.78e-34
late recombination nodule	Hs	cellular component	140	1.78e-34
cytosol	Hs	cellular component	393	1.97e-124
plasma membrane	Hs	cellular component	393	1.97e-124
microtubule cytoskeleton	Hs	cellular component	393	1.97e-124
membrane	Hs	cellular component	140	1.78e-34
hydrolase activity	Hs	molecular function	393	1.97e-124
ATPase activity	Hs	molecular function	393	1.97e-124
mismatched DNA binding	Hs	molecular function	393	1.97e-124
guanine/thymine mispair binding	Hs	molecular function	140	1.78e-34
single base insertion or deletion binding	Hs	molecular function	393	1.97e-124
mismatch repair complex	Hs	cellular component	140	1.78e-34
MutLalpha complex	Hs	cellular component	393	1.97e-124
MutSalpha complex binding	Hs	molecular function	393	1.97e-124
cytoplasmic ribonucleoprotein granule	Hs	cellular component	393	1.97e-124

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
ATP binding	TIGRFAM	molecular function	4.3E-80
mismatch repair	PANTHER	biological process	2.1E-225
mismatched DNA binding	TIGRFAM	molecular function	4.3E-80

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