Aniseed - Gene card

Gene Card

Best human hits

PRPF40A; PRPF40B; WAC

Species

P.mammillata

Unique Gene ID

Phmamm.g00009102

Gene Model ID

Phmamm.CG.MTP2014.S470.g09102

Location

S470:45338..54228

Transcript Models and Sequences

Phmamm.CG.MTP2014.S470.g09102.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

35 results

AHC0AAA38YP11

Plate: Plate_38_P11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
WW_dom	SMART	WW domain
WW_dom	Pfam	WW domain
WW_dom	ProSiteProfiles	WW domain
WW_dom	ProSitePatterns	WW domain
WW_dom_sf	SUPERFAMILY	WW domain superfamily
WW_dom	CDD	WW domain

GOSlim

12 results

GO Term	Annotation Origin	Type
chromatin binding	Blast	molecular function
RNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytosol	Blast	cellular component
membrane	Blast	cellular component
nuclear speck	Blast	cellular component
enzyme binding	Blast	molecular function
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component
nuclear lumen	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core binding	Hs	molecular function	75.9	1.92e-14
chromatin binding	Hs	molecular function	75.9	1.92e-14
RNA binding	Hs	molecular function	40.4	0.003
protein binding	Hs	molecular function	75.9	1.92e-14
nucleus	Hs	cellular component	75.9	1.92e-14
nucleoplasm	Hs	cellular component	75.9	1.92e-14
spliceosomal complex	Hs	cellular component	75.9	1.92e-14
U1 snRNP	Hs	cellular component	40.4	0.003
cytosol	Hs	cellular component	40.4	0.003
membrane	Hs	cellular component	40.4	0.003
nuclear matrix	Hs	cellular component	40.4	0.003
nuclear speck	Hs	cellular component	75.9	1.92e-14
proline-rich region binding	Hs	molecular function	40.4	0.003
U2-type prespliceosome	Hs	cellular component	40.4	0.003

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	3.56E-9