Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S4...'

Gene Card

Best human hits

SMTN; SMTNL1; SMTNL2

Species

P.mammillata

Unique Gene ID

Phmamm.g00009087

Gene Model ID

Phmamm.CG.MTP2014.S469.g09087

Location

S469:14262..22218

Transcript Models and Sequences

Phmamm.CG.MTP2014.S469.g09087.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

36 results

AHC0AAA266YE24

Plate: Plate_266_E24

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
SMTN	Pfam	Smoothelin
CH_dom_sf	SUPERFAMILY	CH domain superfamily
CH-domain	SMART	Calponin homology domain
CH-domain	ProSiteProfiles	Calponin homology domain
CH-domain	Pfam	Calponin homology domain
CH_dom_sf	Gene3D	CH domain superfamily
CH-domain	CDD	Calponin homology domain

GOSlim

12 results

GO Term	Annotation Origin	Type
actin binding	Blast	molecular function
protein binding	Orthology	molecular function
calmodulin binding	Blast	molecular function
nucleus	Blast	cellular component
cytoplasm	Blast	cellular component
cytoskeleton	Blast	cellular component
cytoskeletal protein binding	Blast	molecular function
enzyme binding	Blast	molecular function
structural molecule activity	Blast	molecular function
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
organelle part	Blast	cellular component

GO (Orthology)

1 result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
actin binding	Hs	molecular function	283	1.43e-83
protein binding	Hs	molecular function	283	1.43e-83
calmodulin binding	Hs	molecular function	160	8.72e-43
tropomyosin binding	Hs	molecular function	160	8.72e-43
nucleus	Hs	cellular component	160	8.72e-43
cytoplasm	Hs	cellular component	283	1.43e-83
cytoskeleton	Hs	cellular component	283	1.43e-83
protein phosphatase 1 binding	Hs	molecular function	160	8.72e-43
structural constituent of muscle	Hs	molecular function	283	1.43e-83
actin cytoskeleton	Hs	cellular component	283	1.43e-83
myofibril	Hs	cellular component	160	8.72e-43
M band	Hs	cellular component	160	8.72e-43
I band	Hs	cellular component	160	8.72e-43
contractile fiber	Hs	cellular component	160	8.72e-43
protein self-association	Hs	molecular function	160	8.72e-43
CH domain binding	Hs	molecular function	160	8.72e-43
disordered domain specific binding	Hs	molecular function	160	8.72e-43

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	CDD	molecular function	2.32647E-24