Login
Help

GENE CARD

Submit your Data

  1. Gene 'Phmamm.CG.MTP2014.S4...'

Gene Card

Best human hits

COL5A1; ITLN1; ITLN2

Species

P.mammillata

Unique Gene ID

Phmamm.g00018159

Gene Model ID

Phmamm.CG.MTP2014.S4009.g18159

Location

S4009:3437..8329

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S4009.g18159.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Fibrinogen_a/b/g_C_dom Pfam Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain
Fibrinogen_a/b/g_C_1 Gene3D Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1
Fibrinogen-like_C SUPERFAMILY Fibrinogen-like, C-terminal

GOSlim

20 results

GO Term Annotation Origin Type
integrin binding Blast molecular function
calcium ion binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
endoplasmic reticulum lumen Blast cellular component
plasma membrane Blast cellular component
membrane Blast cellular component
brush border membrane Blast cellular component
identical protein binding Blast molecular function
membrane raft Blast cellular component
metal ion binding Blast molecular function
extracellular exosome Blast cellular component
extracellular region part Blast cellular component
structural molecule activity Blast molecular function
macromolecular complex Blast cellular component
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function
binding Blast molecular function
intrinsic component of membrane Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
integrin binding Hs molecular function 40.4 0.001
extracellular matrix structural constituent Hs molecular function 40.4 0.001
calcium ion binding Hs molecular function 50.1 5.83e-07
protein binding Hs molecular function 40.4 0.001
extracellular region Hs cellular component 50.1 5.83e-07
proteinaceous extracellular matrix Hs cellular component 40.4 0.001
collagen trimer Hs cellular component 40.4 0.001
collagen type V trimer Hs cellular component 40.4 0.001
basement membrane Hs cellular component 40.4 0.001
extracellular space Hs cellular component 40.4 0.001
endoplasmic reticulum lumen Hs cellular component 40.4 0.001
plasma membrane Hs cellular component 50.1 5.83e-07
heparin binding Hs molecular function 40.4 0.001
membrane Hs cellular component 50.1 5.83e-07
carbohydrate binding Hs molecular function 50.1 5.83e-07
extracellular matrix Hs cellular component 40.4 0.001
anchored component of membrane Hs cellular component 50.1 5.83e-07
brush border membrane Hs cellular component 50.1 5.83e-07
identical protein binding Hs molecular function 50.1 5.83e-07
receptor complex Hs cellular component 50.1 5.83e-07
proteoglycan binding Hs molecular function 40.4 0.001
membrane raft Hs cellular component 50.1 5.83e-07
metal ion binding Hs molecular function 50.1 5.83e-07
platelet-derived growth factor binding Hs molecular function 40.4 0.001
extracellular exosome Hs cellular component 50.1 5.83e-07
oligosaccharide binding Hs molecular function 50.1 5.83e-07

GO (InterProScan)

No result

GO Term Analysis Type e-value