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GENE CARD

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Gene Card

Best human hits

COPA; COPB2; PAFAH1B1

Species

P.mammillata

Unique Gene ID

Phmamm.g00001557

Gene Model ID

Phmamm.CG.MTP2014.S40.g01557

Location

S40:199730..214161

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

18 results

AHC0AAA2YI12

Plate: Plate_2_I12

AHC0AAA43YH16

Plate: Plate_43_H16

AHC0AAA60YN07

Plate: Plate_60_N07

AHC0AAA63YJ11

Plate: Plate_63_J11

AHC0AAA66YA15

Plate: Plate_66_A15

AHC0AAA76YG22

Plate: Plate_76_G22

AHC0AAA103YN19

Plate: Plate_103_N19

AHC0AAA105YJ10

Plate: Plate_105_J10

AHC0AAA110YD05

Plate: Plate_110_D05

AHC0AAA111YG08

Plate: Plate_111_G08

AHC0AAA151YI19

Plate: Plate_151_I19

AHC0AAA94YK01

Plate: Plate_94_K01

AHC0AAA183YC07

Plate: Plate_183_C07

AHC0AAA185YG19

Plate: Plate_185_G19

AHC0AAA239YI05

Plate: Plate_239_I05

AHC0AAA250YN08

Plate: Plate_250_N08

AHC0AAA261YB09

Plate: Plate_261_B09

AHC0AAA269YK02

Plate: Plate_269_K02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term Analysis Definition
WD40/YVTN_repeat-like_dom_sf Gene3D WD40/YVTN repeat-like-containing domain superfamily
Haem_d1_sf SUPERFAMILY Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily
WD40_repeat ProSiteProfiles WD40 repeat
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
WD40_repeat Pfam WD40 repeat
Coatomer_WD-assoc_reg Pfam Coatomer, WD associated region
G-protein_beta_WD-40_rep PRINTS G-protein beta WD-40 repeat
WD40_repeat_dom ProSiteProfiles WD40-repeat-containing domain
COPB2 PIRSF Coatomer beta' subunit (COPB2)
WD40_repeat SMART WD40 repeat
Quino_amine_DH_bsu SUPERFAMILY Quinoprotein amine dehydrogenase, beta chain-like

GOSlim

57 results

GO Term Annotation Origin Type
Golgi membrane Orthology cellular component
structural molecule activity Orthology molecular function
protein binding Orthology molecular function
extracellular region Blast cellular component
extracellular space Blast cellular component
nucleus Blast cellular component
nuclear envelope Blast cellular component
cytoplasm Orthology cellular component
endoplasmic reticulum membrane Orthology cellular component
Golgi apparatus Orthology cellular component
centrosome Blast cellular component
microtubule organizing center Blast cellular component
cytosol Orthology cellular component
cytoskeleton Blast cellular component
microtubule Blast cellular component
intracellular protein transport Orthology biological process
microtubule binding Blast molecular function
protein transport Orthology biological process
microtubule cytoskeleton Blast cellular component
membrane Orthology cellular component
axon Blast cellular component
cell leading edge Blast cellular component
cytoplasmic vesicle Orthology cellular component
nuclear membrane Blast cellular component
vesicle Blast cellular component
protein homodimerization activity Blast molecular function
neuron projection Blast cellular component
neuronal cell body Blast cellular component
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
intracellular transport Orthology biological process
cytoplasmic part Orthology cellular component
membrane part Orthology cellular component
macromolecular complex Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
Golgi apparatus part Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Blast cellular component
hydrolase activity Blast molecular function
receptor binding Blast molecular function
molecular function regulator Blast molecular function
regulation of signal transduction Blast biological process
signaling receptor activity Blast molecular function
cytoskeletal part Blast cellular component
cell periphery Blast cellular component
anion binding Blast molecular function
carbohydrate derivative binding Blast molecular function
cell projection part Blast cellular component
organelle Blast cellular component
cell projection Blast cellular component
plasma membrane region Blast cellular component
cluster of actin-based cell projections Blast cellular component
cytoskeletal protein binding Blast molecular function
enzyme binding Blast molecular function
macromolecular complex binding Blast molecular function

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
Golgi membrane Hs cellular component
structural molecule activity Hs molecular function
protein binding Hs molecular function
cytoplasm Hs cellular component
endoplasmic reticulum membrane Hs cellular component
Golgi apparatus Hs cellular component
cytosol Hs cellular component
intracellular protein transport Hs biological process
ER to Golgi vesicle-mediated transport Hs biological process
retrograde vesicle-mediated transport, Golgi to ER Hs biological process
intra-Golgi vesicle-mediated transport Hs biological process
protein transport Hs biological process
membrane Hs cellular component
vesicle-mediated transport Hs biological process
membrane coat Hs cellular component
COPI vesicle coat Hs cellular component
transport vesicle Hs cellular component
COPI-coated vesicle membrane Hs cellular component
cytoplasmic vesicle Hs cellular component
toxin transport Hs biological process

GO (Blast)

51 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
Golgi membrane Hs cellular component 1445 0.0
astral microtubule Hs cellular component 114 7.88e-27
kinetochore Hs cellular component 114 7.88e-27
phospholipase A2 activity Hs molecular function 114 7.88e-27
hormone activity Hs molecular function 253 4.87e-70
structural molecule activity Hs molecular function 1445 0.0
protein binding Hs molecular function 1445 0.0
extracellular region Hs cellular component 253 4.87e-70
extracellular space Hs cellular component 253 4.87e-70
nucleus Hs cellular component 114 7.88e-27
nuclear envelope Hs cellular component 114 7.88e-27
cytoplasm Hs cellular component 1445 0.0
endoplasmic reticulum membrane Hs cellular component 1445 0.0
Golgi apparatus Hs cellular component 1445 0.0
centrosome Hs cellular component 114 7.88e-27
microtubule organizing center Hs cellular component 114 7.88e-27
spindle Hs cellular component 114 7.88e-27
cytosol Hs cellular component 1445 0.0
cytoskeleton Hs cellular component 114 7.88e-27
kinesin complex Hs cellular component 114 7.88e-27
microtubule Hs cellular component 114 7.88e-27
microtubule associated complex Hs cellular component 114 7.88e-27
cell cortex Hs cellular component 114 7.88e-27
microtubule binding Hs molecular function 114 7.88e-27
heparin binding Hs molecular function 114 7.88e-27
microtubule cytoskeleton Hs cellular component 114 7.88e-27
membrane Hs cellular component 1445 0.0
membrane coat Hs cellular component 1445 0.0
COPI vesicle coat Hs cellular component 1445 0.0
transport vesicle Hs cellular component 1445 0.0
axon Hs cellular component 114 7.88e-27
growth cone Hs cellular component 114 7.88e-27
COPI-coated vesicle membrane Hs cellular component 1445 0.0
cell leading edge Hs cellular component 114 7.88e-27
cytoplasmic vesicle Hs cellular component 1445 0.0
motile cilium Hs cellular component 114 7.88e-27
nuclear membrane Hs cellular component 114 7.88e-27
vesicle Hs cellular component 114 7.88e-27
stereocilium Hs cellular component 114 7.88e-27
dynactin binding Hs molecular function 114 7.88e-27
protein homodimerization activity Hs molecular function 114 7.88e-27
neuron projection Hs cellular component 114 7.88e-27
neuronal cell body Hs cellular component 114 7.88e-27
phospholipase binding Hs molecular function 114 7.88e-27
dynein intermediate chain binding Hs molecular function 114 7.88e-27
perinuclear region of cytoplasm Hs cellular component 114 7.88e-27
phosphoprotein binding Hs molecular function 114 7.88e-27
extracellular exosome Hs cellular component 253 4.87e-70
dynein complex binding Hs molecular function 114 7.88e-27
central region of growth cone Hs cellular component 114 7.88e-27
axon cytoplasm Hs cellular component 114 7.88e-27

GO (InterProScan)

5 results

GO Term Analysis Type e-value
structural molecule activity Pfam molecular function 8.0E-169
protein binding Gene3D molecular function 6.5E-109
intracellular protein transport Pfam biological process 8.0E-169
vesicle-mediated transport Pfam biological process 8.0E-169
membrane coat Pfam cellular component 8.0E-169