Aniseed - Gene card

Gene Card

Best human hits

HNRNPDL; MSI1; MSI2

Species

P.mammillata

Unique Gene ID

Phmamm.g00008047

Gene Model ID

Phmamm.CG.MTP2014.S381.g08047

Location

S381:44595..52891

Transcript Models and Sequences

Phmamm.CG.MTP2014.S381.g08047.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Nucleotide-bd_a/b_plait_sf	Gene3D	Nucleotide-binding alpha-beta plait domain superfamily
RRM_dom	Pfam	RNA recognition motif domain
RRM_dom	SMART	RNA recognition motif domain
RRM_dom	ProSiteProfiles	RNA recognition motif domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily

GOSlim

13 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
DNA binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Blast	cellular component
nervous system development	Orthology	biological process
identical protein binding	Orthology	molecular function
extracellular exosome	Blast	cellular component
macromolecular complex	Orthology	cellular component
cell development	Orthology	biological process

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
single-stranded RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
polysome	Hs	cellular component
nervous system development	Hs	biological process
poly(U) RNA binding	Hs	molecular function
identical protein binding	Hs	molecular function
stem cell development	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleic acid binding	Hs	molecular function	169	6.79e-51
DNA binding	Hs	molecular function	107	2.68e-27
RNA binding	Hs	molecular function	169	6.79e-51
single-stranded RNA binding	Hs	molecular function	169	6.79e-51
protein binding	Hs	molecular function	158	5.29e-47
nucleus	Hs	cellular component	169	6.79e-51
nucleoplasm	Hs	cellular component	107	2.68e-27
cytoplasm	Hs	cellular component	169	6.79e-51
cytosol	Hs	cellular component	107	2.68e-27
polysome	Hs	cellular component	169	6.79e-51
poly(U) RNA binding	Hs	molecular function	169	6.79e-51
intracellular ribonucleoprotein complex	Hs	cellular component	107	2.68e-27
identical protein binding	Hs	molecular function	169	6.79e-51
extracellular exosome	Hs	cellular component	107	2.68e-27

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
nucleic acid binding	SUPERFAMILY	molecular function	1.09E-19