Aniseed - Gene card

Gene Card

Best human hits

RYR1; RYR2; RYR3

Species

P.mammillata

Unique Gene ID

Phmamm.g00001490

Gene Model ID

Phmamm.CG.MTP2014.S38.g01490

Location

S38:141846..195104

Transcript Models and Sequences

Phmamm.CG.MTP2014.S38.g01490.01.t
Phmamm.CG.MTP2014.S38.g01490.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

1 result

AHC0AAA89YK06

Plate: Plate_89_K06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

22 results

IPR Term	Analysis	Definition
ConA-like_dom_sf	SUPERFAMILY	Concanavalin A-like lectin/glucanase domain superfamily
EF_hand_dom	ProSiteProfiles	EF-hand domain
RyR/IP3R_RIH_dom_sf	SUPERFAMILY	RyR/IP3 receptor binding core, RIH domain superfamily
EF-hand-dom_pair	SUPERFAMILY	EF-hand domain pair
B30.2/SPRY	ProSiteProfiles	B30.2/SPRY domain
Ryanodine_recept-rel	PANTHER	Ryanodine receptor-related
MIR_motif	ProSiteProfiles	MIR motif
MIR_dom_sf	SUPERFAMILY	Mir domain superfamily
RIH_assoc-dom	Pfam	RyR/IP3R Homology associated domain
MIR_motif	SMART	MIR motif
RIH_dom	Pfam	RIH domain
SPRY3_RyR	CDD	Ryanodine receptor, SPRY domain 3
Ryan_recept	PRINTS	Ryanodine receptor
ARM-type_fold	SUPERFAMILY	Armadillo-type fold
MIR_motif	Pfam	MIR motif
SPRY1_RyR	CDD	Ryanodine receptor, SPRY domain 1
SPRY_dom	SMART	SPRY domain
SPRY_dom	Pfam	SPRY domain
Ins145_P3_rcpt	Pfam	Inositol 1,4,5-trisphosphate/ryanodine receptor
Ryanodine_rcpt	Pfam	Ryanodine receptor Ryr
Ion_trans_dom	Pfam	Ion transport domain
Ryanrecept_TM4-6	Pfam	Ryanodine Receptor TM 4-6

GOSlim

55 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
response to hypoxia	Orthology	biological process
binding	Orthology	molecular function
calcium ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
calmodulin binding	Orthology	molecular function
ATP binding	Orthology	molecular function
cell	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
plasma membrane	Orthology	cellular component
integral component of plasma membrane	Orthology	cellular component
ion transport	Orthology	biological process
multicellular organism development	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
enzyme binding	Orthology	molecular function
protein kinase binding	Orthology	molecular function
organelle membrane	Orthology	cellular component
macromolecular complex	Orthology	cellular component
identical protein binding	Orthology	molecular function
intracellular membrane-bounded organelle	Orthology	cellular component
metal ion binding	Orthology	molecular function
perinuclear region of cytoplasm	Orthology	cellular component
transmembrane transport	Orthology	biological process
extracellular exosome	Orthology	cellular component
organic cyclic compound binding	Orthology	molecular function
heart development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
metal ion transport	Orthology	biological process
intracellular signal transduction	Orthology	biological process
cell periphery	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
cellular process	Orthology	biological process
endoplasmic reticulum membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
endoplasmic reticulum part	Orthology	cellular component
organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
plasma membrane part	Orthology	cellular component
cell surface receptor signaling pathway	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cellular response to organic substance	Orthology	biological process
response to organic substance	Orthology	biological process
animal organ development	Orthology	biological process
small molecule binding	Orthology	molecular function
anion binding	Orthology	molecular function
cell development	Orthology	biological process
localization	Orthology	biological process
protein homooligomerization	Orthology	biological process
response to stimulus	Orthology	biological process
cell-cell signaling	Orthology	biological process
regulation of signaling	Orthology	biological process
positive regulation of hydrolase activity	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function

GO (Orthology)

83 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
response to hypoxia	Hs	biological process
protease binding	Hs	molecular function
regulation of heart rate	Hs	biological process
embryonic heart tube morphogenesis	Hs	biological process
outflow tract morphogenesis	Hs	biological process
ion channel activity	Hs	molecular function
ryanodine-sensitive calcium-release channel activity	Hs	molecular function
voltage-gated calcium channel activity	Hs	molecular function
calcium channel activity	Hs	molecular function
binding	Hs	molecular function
calcium ion binding	Hs	molecular function
detection of calcium ion	Hs	biological process
protein binding	Hs	molecular function
calmodulin binding	Hs	molecular function
ATP binding	Hs	molecular function
cell	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
smooth endoplasmic reticulum	Hs	cellular component
plasma membrane	Hs	cellular component
integral component of plasma membrane	Hs	cellular component
cell cortex	Hs	cellular component
ion transport	Hs	biological process
calcium ion transport	Hs	biological process
cellular calcium ion homeostasis	Hs	biological process
muscle contraction	Hs	biological process
multicellular organism development	Hs	biological process
positive regulation of heart rate	Hs	biological process
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion	Hs	biological process
regulation of cardiac muscle contraction by calcium ion signaling	Hs	biological process
junctional sarcoplasmic reticulum membrane	Hs	cellular component
terminal cisterna	Hs	cellular component
calcium-release channel activity	Hs	molecular function
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
sarcoplasmic reticulum	Hs	cellular component
calcium-mediated signaling	Hs	biological process
enzyme binding	Hs	molecular function
protein kinase binding	Hs	molecular function
sarcomere	Hs	cellular component
Z disc	Hs	cellular component
junctional membrane complex	Hs	cellular component
T-tubule	Hs	cellular component
BMP signaling pathway	Hs	biological process
response to caffeine	Hs	biological process
organelle membrane	Hs	cellular component
integral component of organelle membrane	Hs	cellular component
I band	Hs	cellular component
macromolecular complex	Hs	cellular component
sarcoplasmic reticulum membrane	Hs	cellular component
ion transmembrane transport	Hs	biological process
protein kinase A catalytic subunit binding	Hs	molecular function
protein kinase A regulatory subunit binding	Hs	molecular function
calcium channel complex	Hs	cellular component
identical protein binding	Hs	molecular function
intracellular membrane-bounded organelle	Hs	cellular component
skin development	Hs	biological process
protein self-association	Hs	molecular function
suramin binding	Hs	molecular function
ion channel binding	Hs	molecular function
metal ion binding	Hs	molecular function
perinuclear region of cytoplasm	Hs	cellular component
skeletal muscle fiber development	Hs	biological process
calcium-induced calcium release activity	Hs	molecular function
release of sequestered calcium ion into cytosol	Hs	biological process
positive regulation of sequestering of calcium ion	Hs	biological process
protein homotetramerization	Hs	biological process
regulation of cytosolic calcium ion concentration	Hs	biological process
negative regulation of cytosolic calcium ion concentration	Hs	biological process
response to redox state	Hs	biological process
transmembrane transport	Hs	biological process
regulation of cardiac muscle contraction	Hs	biological process
cardiac muscle contraction	Hs	biological process
canonical Wnt signaling pathway	Hs	biological process
extracellular exosome	Hs	cellular component
calcium ion transmembrane transport	Hs	biological process
cellular response to calcium ion	Hs	biological process
organic cyclic compound binding	Hs	molecular function
regulation of atrial cardiac muscle cell action potential	Hs	biological process
positive regulation of calcium-transporting ATPase activity	Hs	biological process
regulation of cardiac conduction	Hs	biological process
ryanodine receptor complex	Hs	cellular component

GO (Blast)

49 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
nucleotide binding	Hs	molecular function	2308
protease binding	Hs	molecular function	2308
ion channel activity	Hs	molecular function	4321
ryanodine-sensitive calcium-release channel activity	Hs	molecular function	4321
voltage-gated calcium channel activity	Hs	molecular function	2308
calcium channel activity	Hs	molecular function	4321
binding	Hs	molecular function	2704
calcium ion binding	Hs	molecular function	4321
protein binding	Hs	molecular function	4321
calmodulin binding	Hs	molecular function	4321
ATP binding	Hs	molecular function	2308
cell	Hs	cellular component	4321
cytoplasm	Hs	cellular component	2308
endoplasmic reticulum	Hs	cellular component	2704
smooth endoplasmic reticulum	Hs	cellular component	4321
plasma membrane	Hs	cellular component	4321
integral component of plasma membrane	Hs	cellular component	2308
cell cortex	Hs	cellular component	2308
junctional sarcoplasmic reticulum membrane	Hs	cellular component	4321
terminal cisterna	Hs	cellular component	2308
calcium-release channel activity	Hs	molecular function	4321
membrane	Hs	cellular component	4321
integral component of membrane	Hs	cellular component	4321
sarcoplasmic reticulum	Hs	cellular component	4321
enzyme binding	Hs	molecular function	4321
protein kinase binding	Hs	molecular function	4321
sarcomere	Hs	cellular component	4321
Z disc	Hs	cellular component	4321
junctional membrane complex	Hs	cellular component	2308
T-tubule	Hs	cellular component	2308
organelle membrane	Hs	cellular component	2704
integral component of organelle membrane	Hs	cellular component	2308
I band	Hs	cellular component	2308
macromolecular complex	Hs	cellular component	4321
sarcoplasmic reticulum membrane	Hs	cellular component	4321
protein kinase A catalytic subunit binding	Hs	molecular function	4321
protein kinase A regulatory subunit binding	Hs	molecular function	4321
calcium channel complex	Hs	cellular component	4321
identical protein binding	Hs	molecular function	4321
intracellular membrane-bounded organelle	Hs	cellular component	2704
protein self-association	Hs	molecular function	4321
suramin binding	Hs	molecular function	4321
ion channel binding	Hs	molecular function	4321
metal ion binding	Hs	molecular function	2308
perinuclear region of cytoplasm	Hs	cellular component	2704
calcium-induced calcium release activity	Hs	molecular function	4321
extracellular exosome	Hs	cellular component	4321
organic cyclic compound binding	Hs	molecular function	4321
ryanodine receptor complex	Hs	cellular component	2308

GO (InterProScan)

13 results

GO Term	Analysis	Type	e-value
ion channel activity	Pfam	molecular function	3.2E-6
ryanodine-sensitive calcium-release channel activity	PRINTS	molecular function	1.0E-71
calcium channel activity	Pfam	molecular function	1.2E-65
binding	SUPERFAMILY	molecular function	4.32E-5
calcium ion binding	ProSiteProfiles	molecular function	8.627
protein binding	SMART	molecular function	5.3E-31
ion transport	Pfam	biological process	3.2E-6
calcium ion transport	PANTHER	biological process	0.0
cellular calcium ion homeostasis	Pfam	biological process	8.1E-11
membrane	Pfam	cellular component	1.2E-65
integral component of membrane	Pfam	cellular component	8.1E-11
transmembrane transport	Pfam	biological process	3.2E-6
calcium ion transmembrane transport	Pfam	biological process	1.2E-65