Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S3...'

Gene Card

Best human hits

NPAS3; SIM1; SIM2

Species

P.mammillata

Unique Gene ID

Phmamm.g00007966

Gene Model ID

Phmamm.CG.MTP2014.S374.g07966

Location

S374:43102..50532

Transcript Models and Sequences

Phmamm.CG.MTP2014.S374.g07966.01.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
PAS	CDD	PAS domain
PAS_fold	Pfam	PAS fold
PAS-like_dom_sf	SUPERFAMILY	PAS domain superfamily
PAC	SMART	PAC motif
PAS_fold_3	Pfam	PAS fold-3
PAS	ProSiteProfiles	PAS domain
PAS	TIGRFAM	PAS domain
PAS	SMART	PAS domain

GOSlim

19 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
nervous system development	Orthology	biological process
nuclear body	Orthology	cellular component
cell differentiation	Orthology	biological process
negative regulation of transcription, DNA-templated	Orthology	biological process
protein heterodimerization activity	Orthology	molecular function
protein dimerization activity	Orthology	molecular function
animal organ development	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
ureteric bud development	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
nervous system development	Hs	biological process
embryonic pattern specification	Hs	biological process
nuclear body	Hs	cellular component
cell differentiation	Hs	biological process
lung development	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
protein heterodimerization activity	Hs	molecular function
protein dimerization activity	Hs	molecular function

GO (Blast)

10 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	313	4.40e-97
DNA binding	Hs	molecular function	313	4.40e-97
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	313	4.40e-97
protein binding	Hs	molecular function	313	4.40e-97
nucleus	Hs	cellular component	313	4.40e-97
nucleoplasm	Hs	cellular component	309	1.31e-96
cytosol	Hs	cellular component	193	1.52e-52
nuclear body	Hs	cellular component	309	1.31e-96
protein heterodimerization activity	Hs	molecular function	313	4.40e-97
protein dimerization activity	Hs	molecular function	313	4.40e-97

GO (InterProScan)

2 results

GO Term	Analysis	Type	e-value
protein binding	Pfam	molecular function	9.1E-20
regulation of transcription, DNA-templated	Pfam	biological process	3.5E-10