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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S3...'

Gene Card

Best human hits

BMI1; COMMD3-BMI1; PCGF2

Species

P.mammillata

Unique Gene ID

Phmamm.g00001377

Gene Model ID

Phmamm.CG.MTP2014.S35.g01377

Location

S35:204427..208951

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S35.g01377.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

2 results

AHC0AAA4YJ20

Plate: Plate_4_J20

AHC0AAA154YF06

Plate: Plate_154_F06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_RING/FYVE/PHD Gene3D Zinc finger, RING/FYVE/PHD-type
Znf_RING ProSiteProfiles Zinc finger, RING-type
Znf_RING SMART Zinc finger, RING-type
Znf_RING_CS ProSitePatterns Zinc finger, RING-type, conserved site

GOSlim

16 results

GO Term Annotation Origin Type
DNA binding Blast molecular function
chromatin binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
zinc ion binding Blast molecular function
nuclear body Blast cellular component
metal ion binding Blast molecular function
intracellular part Blast cellular component
macromolecular complex Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
nuclear part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
ubiquitin ligase complex Hs cellular component 193 1.01e-54
nuclear chromatin Hs cellular component 187 3.36e-52
sex chromatin Hs cellular component 187 3.36e-52
DNA binding Hs molecular function 187 3.36e-52
chromatin binding Hs molecular function 187 3.36e-52
transcription factor activity, sequence-specific DNA binding Hs molecular function 187 3.36e-52
protein binding Hs molecular function 193 1.01e-54
nucleus Hs cellular component 193 1.01e-54
nucleoplasm Hs cellular component 193 1.01e-54
cytoplasm Hs cellular component 193 1.01e-54
cytosol Hs cellular component 193 1.01e-54
zinc ion binding Hs molecular function 193 1.01e-54
nuclear body Hs cellular component 193 1.01e-54
PcG protein complex Hs cellular component 193 1.01e-54
PRC1 complex Hs cellular component 193 1.01e-54
metal ion binding Hs molecular function 193 1.01e-54
RING-like zinc finger domain binding Hs molecular function 193 1.01e-54
promoter-specific chromatin binding Hs molecular function 193 1.01e-54

GO (InterProScan)

No result

GO Term Analysis Type e-value