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GENE CARD

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Gene Card

Best human hits

NCOA7; OXR1; TLDC2

Species

P.mammillata

Unique Gene ID

Phmamm.g00007383

Gene Model ID

Phmamm.CG.MTP2014.S332.g07383

Location

S332:25885..41032

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S332.g07383.01.t
Phmamm.CG.MTP2014.S332.g07383.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

18 results

AHC0AAA1YG17

Plate: Plate_1_G17

AHC0AAA12YK10

Plate: Plate_12_K10

AHC0AAA4YO09

Plate: Plate_4_O09

AHC0AAA8YK11

Plate: Plate_8_K11

AHC0AAA29YO03

Plate: Plate_29_O03

AHC0AAA48YC05

Plate: Plate_48_C05

AHC0AAA55YK22

Plate: Plate_55_K22

AHC0AAA58YN20

Plate: Plate_58_N20

AHC0AAA74YP01

Plate: Plate_74_P01

AHC0AAA75YD07

Plate: Plate_75_D07

AHC0AAA77YC11

Plate: Plate_77_C11

AHC0AAA79YG21

Plate: Plate_79_G21

AHC0AAA115YC09

Plate: Plate_115_C09

AHC0AAA146YG18

Plate: Plate_146_G18

AHC0AAA244YF08

Plate: Plate_244_F08

AHC0AAA249YF11

Plate: Plate_249_F11

AHC0AAA263YJ17

Plate: Plate_263_J17

AHC0AAA55YM24

Plate: Plate_55_M24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
LysM_dom CDD LysM domain
TLDc_dom SMART TLDc domain
LysM_dom Pfam LysM domain
LysM_dom_sf Gene3D LysM domain superfamily
LysM_dom SMART LysM domain
LysM_dom ProSiteProfiles LysM domain
TLDc_dom Pfam TLDc domain

GOSlim

12 results

GO Term Annotation Origin Type
protein binding Blast molecular function
intracellular Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
mitochondrion Blast cellular component
intracellular membrane-bounded organelle Blast cellular component
oxidation-reduction process Blast biological process
catalytic activity Blast molecular function
transcription coactivator activity Blast molecular function
receptor binding Blast molecular function
transcription factor binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
protein binding Hs molecular function 237 4.10e-67
intracellular Hs cellular component 237 4.10e-67
nucleus Hs cellular component 237 4.10e-67
nucleoplasm Hs cellular component 233 7.12e-66
nucleolus Hs cellular component 233 7.12e-66
mitochondrion Hs cellular component 233 7.12e-66
oxidoreductase activity Hs molecular function 233 7.12e-66
ligand-dependent nuclear receptor transcription coactivator activity Hs molecular function 237 4.10e-67
nuclear hormone receptor binding Hs molecular function 237 4.10e-67
intracellular membrane-bounded organelle Hs cellular component 233 7.12e-66

GO (InterProScan)

No result

GO Term Analysis Type e-value

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