Aniseed - Gene card

External Database Gene Card

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WashU Genome Browser

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Genomicus Synteny Browser

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Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
DNA-dir_RNA_pol_M/15kDasu	SMART	DNA-directed RNA polymerase, M/15kDa subunit
Rpa12/Rpb9/Rpc10/TFS	PIRSF	DNA-directed RNA polymerase subunit/transcription factor S
Znf_TFIIS	Pfam	Zinc finger, TFIIS-type
Znf_TFIIS	ProSiteProfiles	Zinc finger, TFIIS-type
DNA-dir_RNA_pol_M/15kDasu	Pfam	DNA-directed RNA polymerase, M/15kDa subunit
Zn_ribbon_RPB9_C	CDD	Pol II subunit B9, C-terminal zinc ribbon
DNA-dir_RNA_pol-M_15_CS	ProSitePatterns	DNA-directed RNA polymerase M, 15kDa subunit, conserved site
Znf_TFIIS	SMART	Zinc finger, TFIIS-type

GOSlim

25 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytosol	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
zinc ion binding	Orthology	molecular function
RNA metabolic process	Orthology	biological process
metal ion binding	Orthology	molecular function
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
RNA biosynthetic process	Orthology	biological process
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
DNA repair	Orthology	biological process
mRNA processing	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
developmental process	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
nuclear lumen	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear part	Blast	cellular component

GO (Orthology)

22 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter	Hs	biological process
nucleic acid binding	Hs	molecular function
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
DNA-directed RNA polymerase II, core complex	Hs	cellular component
nucleolus	Hs	cellular component
transcription-coupled nucleotide-excision repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
7-methylguanosine mRNA capping	Hs	biological process
mRNA cleavage	Hs	biological process
zinc ion binding	Hs	molecular function
fibroblast growth factor receptor signaling pathway	Hs	biological process
RNA metabolic process	Hs	biological process
somatic stem cell population maintenance	Hs	biological process
snRNA transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
regulation of gene silencing by miRNA	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase I activity	Hs	molecular function	38.5	1.49e-04
RNA polymerase III activity	Hs	molecular function	57.0	1.18e-11
nucleic acid binding	Hs	molecular function	210	5.43e-72
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	210	5.43e-72
nucleus	Hs	cellular component	210	5.43e-72
nucleoplasm	Hs	cellular component	210	5.43e-72
DNA-directed RNA polymerase II, core complex	Hs	cellular component	210	5.43e-72
DNA-directed RNA polymerase III complex	Hs	cellular component	57.0	1.18e-11
nucleolus	Hs	cellular component	210	5.43e-72
DNA-directed RNA polymerase I complex	Hs	cellular component	38.5	1.49e-04
cytosol	Hs	cellular component	57.0	1.18e-11
zinc ion binding	Hs	molecular function	210	5.43e-72
metal ion binding	Hs	molecular function	210	5.43e-72

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	2.1E-14
transcription, DNA-templated	SMART	biological process	6.2E-20
mRNA cleavage	CDD	biological process	6.54162E-28
zinc ion binding	Pfam	molecular function	2.1E-14

Gene Card

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