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GENE CARD

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Gene Card

Best human hits

TBX19; TBX6; TBXT

Species

P.mammillata

Unique Gene ID

Phmamm.g00007005

Gene Model ID

Phmamm.CG.MTP2014.S305.g07005

Location

S305:65738..69567

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term Analysis Definition
TF_T-box_CS ProSitePatterns Transcription factor, T-box, conserved site
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding
TF_T-box Pfam Transcription factor, T-box
TF_T-box ProSiteProfiles Transcription factor, T-box
TF_T-box PRINTS Transcription factor, T-box
TF_Brachyury PRINTS Transcription factor, Brachyury
TF_T-box PANTHER Transcription factor, T-box
TF_T-box CDD Transcription factor, T-box
TF_T-box SMART Transcription factor, T-box
T-box_sf Gene3D T-box superfamily

GOSlim

15 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
cytoplasm Blast cellular component
regulation of transcription, DNA-templated InterProScan biological process
sequence-specific DNA binding Blast molecular function
intracellular organelle part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
transcription factor binding Blast molecular function
transcription regulatory region sequence-specific DNA binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
chromatin Hs cellular component 313 5.88e-102
nuclear chromatin Hs cellular component 313 5.88e-102
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 313 5.88e-102
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 313 5.88e-102
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 313 5.88e-102
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 283 1.99e-90
RNA polymerase II transcription factor binding Hs molecular function 313 5.88e-102
RNA polymerase II activating transcription factor binding Hs molecular function 313 5.88e-102
enhancer sequence-specific DNA binding Hs molecular function 283 1.99e-90
transcriptional repressor activity, RNA polymerase II transcription factor binding Hs molecular function 313 5.88e-102
DNA binding Hs molecular function 313 5.88e-102
transcription factor activity, sequence-specific DNA binding Hs molecular function 313 5.88e-102
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function 313 5.88e-102
protein binding Hs molecular function 199 2.48e-58
nucleus Hs cellular component 313 5.88e-102
cytoplasm Hs cellular component 313 5.88e-102
sequence-specific DNA binding Hs molecular function 313 5.88e-102

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 4.8E-136
nucleus PANTHER cellular component 4.8E-136
regulation of transcription, DNA-templated PANTHER biological process 4.8E-136