Login
Help

GENE CARD

Submit your Data

  1. Gene 'Phmamm.CG.MTP2014.S2...'

Gene Card

Best human hits

LRRC74B; NLRP5; NOD2

Species

P.mammillata

Unique Gene ID

Phmamm.g00016990

Gene Model ID

Phmamm.CG.MTP2014.S2708.g16990

Location

S2708:2778..4611

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S2708.g16990.01.t

External Database Gene Card

External database links

No result

Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
Leu-rich_rpt Pfam Leucine-rich repeat
LRR_dom_sf Gene3D Leucine-rich repeat domain superfamily

GOSlim

21 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
actin binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
nucleus Blast cellular component
nucleolus Blast cellular component
cytoplasm Blast cellular component
mitochondrion Blast cellular component
Golgi apparatus Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
basolateral plasma membrane Blast cellular component
enzyme binding Blast molecular function
protein kinase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
nuclear part Blast cellular component
carbohydrate derivative binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

25 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 40.0 7.44e-04
actin binding Hs molecular function 40.0 7.44e-04
protein binding Hs molecular function 40.0 7.44e-04
ATP binding Hs molecular function 40.0 7.44e-04
nucleus Hs cellular component 37.7 0.004
nucleolus Hs cellular component 37.7 0.004
cytoplasm Hs cellular component 40.0 7.44e-04
mitochondrion Hs cellular component 40.0 7.44e-04
Golgi apparatus Hs cellular component 40.0 7.44e-04
cytosol Hs cellular component 40.0 7.44e-04
cytoskeleton Hs cellular component 40.0 7.44e-04
plasma membrane Hs cellular component 40.0 7.44e-04
COP9 signalosome Hs cellular component 40.0 7.44e-04
cell surface Hs cellular component 40.0 7.44e-04
membrane Hs cellular component 40.0 7.44e-04
basolateral plasma membrane Hs cellular component 40.0 7.44e-04
enzyme binding Hs molecular function 40.0 7.44e-04
protein kinase binding Hs molecular function 40.0 7.44e-04
Hsp70 protein binding Hs molecular function 40.0 7.44e-04
vesicle Hs cellular component 40.0 7.44e-04
muramyl dipeptide binding Hs molecular function 40.0 7.44e-04
macromolecular complex Hs cellular component 40.0 7.44e-04
peptidoglycan binding Hs molecular function 40.0 7.44e-04
CARD domain binding Hs molecular function 40.0 7.44e-04
Hsp90 protein binding Hs molecular function 40.0 7.44e-04

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 0.023