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GENE CARD

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Gene Card

Best human hits

ACTA2; ACTB; ACTG1

Species

P.mammillata

Unique Gene ID

Phmamm.g00006426

Gene Model ID

Phmamm.CG.MTP2014.S269.g06426

Location

S269:43388..46641

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S269.g06426.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

17 results

AHC0AAA17YD20

Plate: Plate_17_D20

AHC0AAA25YO23

Plate: Plate_25_O23

AHC0AAA47YI03

Plate: Plate_47_I03

AHC0AAA67YE07

Plate: Plate_67_E07

AHC0AAA69YI14

Plate: Plate_69_I14

AHC0AAA111YP19

Plate: Plate_111_P19

AHC0AAA120YM24

Plate: Plate_120_M24

AHC0AAA128YB12

Plate: Plate_128_B12

AHC0AAA149YF09

Plate: Plate_149_F09

AHC0AAA98YA19

Plate: Plate_98_A19

AHC0AAA179YC01

Plate: Plate_179_C01

AHC0AAA225YG06

Plate: Plate_225_G06

AHC0AAA226YL10

Plate: Plate_226_L10

AHC0AAA244YH19

Plate: Plate_244_H19

AHC0AAA248YO14

Plate: Plate_248_O14

AHC0AAA250YP22

Plate: Plate_250_P22

AHC0AAA98YA17

Plate: Plate_98_A17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Actin PANTHER Actin family
Actin_CS ProSitePatterns Actin, conserved site
Actin Pfam Actin family
Actin SMART Actin family
Actin PRINTS Actin family
Actin/actin-like_CS ProSitePatterns Actin/actin-like conserved site

GOSlim

40 results

GO Term Annotation Origin Type
nucleotide binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
protein binding Blast molecular function
ATP binding Blast molecular function
extracellular space Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
cytosol Blast cellular component
cytoskeleton Blast cellular component
plasma membrane Blast cellular component
focal adhesion Blast cellular component
membrane Blast cellular component
protein kinase binding Blast molecular function
lamellipodium Blast cellular component
ubiquitin protein ligase binding Blast molecular function
vesicle Blast cellular component
macromolecular complex Blast cellular component
identical protein binding Blast molecular function
myelin sheath Blast cellular component
cell body Blast cellular component
extracellular exosome Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
nuclear lumen Blast cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
organelle organization Blast biological process
structural molecule activity Blast molecular function
cytoskeletal part Blast cellular component
cytoskeletal protein binding Blast molecular function
cytoplasmic part Blast cellular component
plasma membrane region Blast cellular component
cell projection Blast cellular component
organelle part Blast cellular component
transcription factor binding Blast molecular function
chromatin binding Blast molecular function
macromolecular complex binding Blast molecular function
DNA binding Blast molecular function
nucleoplasm part Blast cellular component
cytoplasmic vesicle Blast cellular component
enzyme binding Blast molecular function

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type

GO (Blast)

43 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 743 0.0
nuclear chromatin Hs cellular component 743 0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 743 0.0
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 743 0.0
structural constituent of cytoskeleton Hs molecular function 743 0.0
protein binding Hs molecular function 743 0.0
profilin binding Hs molecular function 741 0.0
ATP binding Hs molecular function 743 0.0
extracellular space Hs cellular component 743 0.0
nucleus Hs cellular component 743 0.0
nucleoplasm Hs cellular component 743 0.0
cytoplasm Hs cellular component 743 0.0
cytosol Hs cellular component 743 0.0
cytoskeleton Hs cellular component 743 0.0
actin filament Hs cellular component 741 0.0
plasma membrane Hs cellular component 743 0.0
focal adhesion Hs cellular component 743 0.0
actin cytoskeleton Hs cellular component 743 0.0
membrane Hs cellular component 743 0.0
kinesin binding Hs molecular function 743 0.0
protein kinase binding Hs molecular function 743 0.0
myofibril Hs cellular component 741 0.0
lamellipodium Hs cellular component 729 0.0
filopodium Hs cellular component 729 0.0
smooth muscle contractile fiber Hs cellular component 729 0.0
intracellular ribonucleoprotein complex Hs cellular component 743 0.0
Tat protein binding Hs molecular function 743 0.0
nucleosomal DNA binding Hs molecular function 743 0.0
ubiquitin protein ligase binding Hs molecular function 741 0.0
filamentous actin Hs cellular component 741 0.0
vesicle Hs cellular component 743 0.0
macromolecular complex Hs cellular component 743 0.0
NuA4 histone acetyltransferase complex Hs cellular component 743 0.0
cytoplasmic ribonucleoprotein granule Hs cellular component 743 0.0
identical protein binding Hs molecular function 743 0.0
myelin sheath Hs cellular component 741 0.0
cell body Hs cellular component 729 0.0
phagocytic vesicle Hs cellular component 741 0.0
nitric-oxide synthase binding Hs molecular function 743 0.0
extracellular exosome Hs cellular component 743 0.0
blood microparticle Hs cellular component 743 0.0
dense body Hs cellular component 743 0.0
structural constituent of postsynaptic actin cytoskeleton Hs molecular function 743 0.0

GO (InterProScan)

No result

GO Term Analysis Type e-value