Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	SMART	Homeobox domain
Homeobox_dom	Pfam	Homeobox domain
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	CDD	Homeobox domain

GOSlim

30 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
transcription factor binding	Blast	molecular function
nuclear body	Orthology	cellular component
nuclear membrane	Blast	cellular component
sequence-specific DNA binding	Orthology	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Orthology	molecular function
centrosome	Orthology	cellular component
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
cell proliferation	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
cell junction	Orthology	cellular component
system development	Orthology	biological process
animal organ development	Orthology	biological process
immune system process	Orthology	biological process
cell division	Orthology	biological process
cell differentiation	Orthology	biological process

GO (Orthology)

35 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
skeletal system development	Hs	biological process
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
anterior/posterior pattern specification	Hs	biological process
nuclear body	Hs	cellular component
sequence-specific DNA binding	Hs	molecular function
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding	Hs	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function
morphogenesis of an epithelial sheet	Hs	biological process
centrosome	Hs	cellular component
regulation of transcription from RNA polymerase II promoter	Hs	biological process
cell proliferation	Hs	biological process
anatomical structure morphogenesis	Hs	biological process
cell junction	Hs	cellular component
hemopoiesis	Hs	biological process
somatic stem cell division	Hs	biological process
embryonic organ morphogenesis	Hs	biological process
skeletal system morphogenesis	Hs	biological process
cartilage development	Hs	biological process
definitive hemopoiesis	Hs	biological process
hematopoietic stem cell differentiation	Hs	biological process
HMG box domain binding	Hs	molecular function
positive regulation of stem cell differentiation	Hs	biological process

GO (Blast)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	141	1.47e-41
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	133	1.07e-37
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	141	1.47e-41
DNA binding	Hs	molecular function	141	1.47e-41
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	141	1.47e-41
protein binding	Hs	molecular function	141	1.47e-41
nucleus	Hs	cellular component	141	1.47e-41
nucleoplasm	Hs	cellular component	141	1.47e-41
cytosol	Hs	cellular component	141	1.47e-41
transcription factor binding	Hs	molecular function	129	1.22e-36
nuclear body	Hs	cellular component	141	1.47e-41
nuclear membrane	Hs	cellular component	129	1.22e-36
sequence-specific DNA binding	Hs	molecular function	141	1.47e-41

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SUPERFAMILY	molecular function	8.55E-27
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location