Aniseed - Gene card

Gene 'Phmamm.CG.MTP2014.S2...'

Gene Card

Best human hits

HOXA10; HOXC10; HOXD10

Species

P.mammillata

Unique Gene ID

Phmamm.g00006059

Gene Model ID

Phmamm.CG.MTP2014.S245.g06059

Location

S245:60598..64824

Transcript Models and Sequences

Phmamm.CG.MTP2014.S245.g06059.01.t
Phmamm.CG.MTP2014.S245.g06059.02.t

External Database Gene Card

External database links

No result

Collections

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Homeobox_dom	Pfam	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	SMART	Homeobox domain
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox_dom	CDD	Homeobox domain

GOSlim

21 results

GO Term	Annotation Origin	Type
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
DNA binding	Blast	molecular function
chromatin binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
regulation of transcription, DNA-templated	InterProScan	biological process
nuclear body	Blast	cellular component
sequence-specific DNA binding	Blast	molecular function
intracellular part	Blast	cellular component
macromolecular complex	Blast	cellular component
nuclear part	Blast	cellular component
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component
enzyme binding	Blast	molecular function

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	125	2.03e-32
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	123	7.25e-31
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	125	2.03e-32
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	123	7.25e-31
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	125	2.03e-32
DNA binding	Hs	molecular function	125	2.03e-32
chromatin binding	Hs	molecular function	125	2.03e-32
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	125	2.03e-32
protein binding	Hs	molecular function	123	7.25e-31
nucleus	Hs	cellular component	125	2.03e-32
nucleoplasm	Hs	cellular component	125	2.03e-32
transcription factor complex	Hs	cellular component	123	7.25e-31
cytoplasm	Hs	cellular component	123	7.25e-31
cytosol	Hs	cellular component	125	2.03e-32
nuclear body	Hs	cellular component	122	3.82e-31
cyclin-dependent protein kinase activating kinase holoenzyme complex	Hs	cellular component	122	3.82e-31
cytoplasmic ribonucleoprotein granule	Hs	cellular component	125	2.03e-32
histone deacetylase binding	Hs	molecular function	123	7.25e-31
sequence-specific DNA binding	Hs	molecular function	125	2.03e-32

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	7.8E-26
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function