Aniseed - Gene card

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Genoscope Yasuo Villefranche

4 results

AHC0AAA261YB06

Plate: Plate_261_B06

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Regulatory Regions

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Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
Znf_CXXC	ProSiteProfiles	Zinc finger, CXXC-type
DNMT1-like	PIRSF	DNA (cytosine-5)-methyltransferase 1-like
C5_MeTfrase	ProSiteProfiles	C-5 cytosine methyltransferase
BAH_dom	SMART	Bromo adjacent homology (BAH) domain
BAH_dom	Pfam	Bromo adjacent homology (BAH) domain
BAH_dom	ProSiteProfiles	Bromo adjacent homology (BAH) domain
C5_MeTfrase	PRINTS	C-5 cytosine methyltransferase
SAM-dependent_MTases	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferase
C5_meth_CS	ProSitePatterns	DNA methylase, C-5 cytosine-specific, conserved site
Cytosine_MeTrfase1_RFD	Pfam	DNA (cytosine-5)-methyltransferase 1, replication foci domain
C5_DNA_meth_AS	ProSitePatterns	DNA methylase, C-5 cytosine-specific, active site
C5_MeTfrase	Pfam	C-5 cytosine methyltransferase
Znf_CXXC	Pfam	Zinc finger, CXXC-type

GOSlim

37 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
zinc ion binding	Orthology	molecular function
regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
transferase activity	Orthology	molecular function
regulation of cell proliferation	Orthology	biological process
negative regulation of transcription, DNA-templated	Orthology	biological process
metal ion binding	Orthology	molecular function
oxidation-reduction process	Blast	biological process
intracellular organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
DNA metabolic process	Orthology	biological process
organelle organization	Orthology	biological process
small GTPase mediated signal transduction	Orthology	biological process
metabolic process	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
nucleotide binding	Orthology	molecular function
negative regulation of gene expression	Orthology	biological process
cellular process	Orthology	biological process
multicellular organism development	Orthology	biological process
cellular protein modification process	Orthology	biological process
cellular response to organic substance	Orthology	biological process
catalytic activity	Blast	molecular function
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component
nucleoplasm part	Blast	cellular component

GO (Orthology)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
heterochromatin	Hs	cellular component
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
RNA binding	Hs	molecular function
DNA (cytosine-5-)-methyltransferase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
replication fork	Hs	cellular component
pericentric heterochromatin	Hs	cellular component
DNA methylation	Hs	biological process
chromatin organization	Hs	biological process
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
Ras protein signal transduction	Hs	biological process
methyltransferase activity	Hs	molecular function
zinc ion binding	Hs	molecular function
methyl-CpG binding	Hs	molecular function
DNA-methyltransferase activity	Hs	molecular function
maintenance of DNA methylation	Hs	biological process
regulation of gene expression	Hs	biological process
positive regulation of gene expression	Hs	biological process
gene silencing	Hs	biological process
transferase activity	Hs	molecular function
methylation	Hs	biological process
DNA methylation on cytosine	Hs	biological process
regulation of cell proliferation	Hs	biological process
DNA methylation involved in embryo development	Hs	biological process
negative regulation of gene expression, epigenetic	Hs	biological process
negative regulation of transcription, DNA-templated	Hs	biological process
metal ion binding	Hs	molecular function
positive regulation of histone H3-K4 methylation	Hs	biological process
cellular response to amino acid stimulus	Hs	biological process
C-5 methylation of cytosine	Hs	biological process
positive regulation of methylation-dependent chromatin silencing	Hs	biological process
promoter-specific chromatin binding	Hs	molecular function

GO (Blast)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
heterochromatin	Hs	cellular component	1099	0.0
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	59.3	1.51e-08
DNA binding	Hs	molecular function	1099	0.0
chromatin binding	Hs	molecular function	1099	0.0
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	56.2	1.37e-07
RNA binding	Hs	molecular function	1099	0.0
DNA (cytosine-5-)-methyltransferase activity	Hs	molecular function	1099	0.0
protein binding	Hs	molecular function	1099	0.0
nucleus	Hs	cellular component	1099	0.0
nucleoplasm	Hs	cellular component	1099	0.0
replication fork	Hs	cellular component	1099	0.0
pericentric heterochromatin	Hs	cellular component	1099	0.0
nucleolus	Hs	cellular component	59.3	1.51e-08
methyltransferase activity	Hs	molecular function	1099	0.0
zinc ion binding	Hs	molecular function	1099	0.0
methyl-CpG binding	Hs	molecular function	1099	0.0
DNA-methyltransferase activity	Hs	molecular function	1099	0.0
oxidoreductase activity	Hs	molecular function	59.3	1.51e-08
transferase activity	Hs	molecular function	1099	0.0
histone-lysine N-methyltransferase activity	Hs	molecular function	56.2	1.37e-07
rRNA binding	Hs	molecular function	59.3	1.51e-08
PcG protein complex	Hs	cellular component	59.3	1.51e-08
histone demethylase activity	Hs	molecular function	59.3	1.51e-08
histone methyltransferase complex	Hs	cellular component	56.2	1.37e-07
histone methyltransferase activity (H3-K4 specific)	Hs	molecular function	56.2	1.37e-07
metal ion binding	Hs	molecular function	1099	0.0
dioxygenase activity	Hs	molecular function	59.3	1.51e-08
histone demethylase activity (H3-K36 specific)	Hs	molecular function	59.3	1.51e-08
promoter-specific chromatin binding	Hs	molecular function	1099	0.0

GO (InterProScan)

7 results

GO Term	Analysis	Type	e-value
DNA binding	Pfam	molecular function	3.1E-14
chromatin binding	SMART	molecular function	2.8E-24
DNA (cytosine-5-)-methyltransferase activity	PIRSF	molecular function	9.8E-263
nucleus	PIRSF	cellular component	9.8E-263
methyltransferase activity	Pfam	molecular function	4.2E-18
zinc ion binding	Pfam	molecular function	3.1E-14
C-5 methylation of cytosine	PIRSF	biological process	9.8E-263

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