Login
Help

GENE CARD

Submit your Data

Gene Card

Best human hits

PBX1; PBX2; PBX4

Species

P.mammillata

Unique Gene ID

Phmamm.g00016169

Gene Model ID

Phmamm.CG.MTP2014.S2087.g16169

Location

S2087:8186..13111

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

42 results

AHC0AAA13YE13

Plate: Plate_13_E13

AHC0AAA14YC02

Plate: Plate_14_C02

AHC0AAA22YP13

Plate: Plate_22_P13

AHC0AAA24YK02

Plate: Plate_24_K02

AHC0AAA32YB11

Plate: Plate_32_B11

AHC0AAA34YP20

Plate: Plate_34_P20

AHC0AAA41YE05

Plate: Plate_41_E05

AHC0AAA46YF09

Plate: Plate_46_F09

AHC0AAA65YM06

Plate: Plate_65_M06

AHC0AAA73YO24

Plate: Plate_73_O24

AHC0AAA103YO24

Plate: Plate_103_O24

AHC0AAA105YJ09

Plate: Plate_105_J09

AHC0AAA121YH16

Plate: Plate_121_H16

AHC0AAA123YN02

Plate: Plate_123_N02

AHC0AAA127YG22

Plate: Plate_127_G22

AHC0AAA130YJ01

Plate: Plate_130_J01

AHC0AAA131YH05

Plate: Plate_131_H05

AHC0AAA131YP19

Plate: Plate_131_P19

AHC0AAA138YB16

Plate: Plate_138_B16

AHC0AAA152YL14

Plate: Plate_152_L14

AHC0AAA91YI16

Plate: Plate_91_I16

AHC0AAA92YC09

Plate: Plate_92_C09

AHC0AAA95YJ18

Plate: Plate_95_J18

AHC0AAA168YB16

Plate: Plate_168_B16

AHC0AAA168YF16

Plate: Plate_168_F16

AHC0AAA179YK22

Plate: Plate_179_K22

AHC0AAA181YO19

Plate: Plate_181_O19

AHC0AAA185YI10

Plate: Plate_185_I10

AHC0AAA193YD12

Plate: Plate_193_D12

AHC0AAA194YA13

Plate: Plate_194_A13

AHC0AAA194YG21

Plate: Plate_194_G21

AHC0AAA196YI12

Plate: Plate_196_I12

AHC0AAA214YK10

Plate: Plate_214_K10

AHC0AAA222YL18

Plate: Plate_222_L18

AHC0AAA233YH20

Plate: Plate_233_H20

AHC0AAA241YL24

Plate: Plate_241_L24

AHC0AAA248YL12

Plate: Plate_248_L12

AHC0AAA249YF23

Plate: Plate_249_F23

AHC0AAA253YO12

Plate: Plate_253_O12

AHC0AAA260YK11

Plate: Plate_260_K11

AHC0AAA266YJ17

Plate: Plate_266_J17

AHC0AAA92YE11

Plate: Plate_92_E11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
 Click here to see how you can interact with this tree

 Click here to see the tree inference method

Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
Homeobox_CS ProSitePatterns Homeobox, conserved site
Homeobox_dom Pfam Homeobox domain
Homeobox-like_sf SUPERFAMILY Homeobox-like domain superfamily
PBX Pfam PBX
Homeobox_dom SMART Homeobox domain
Homeobox_dom CDD Homeobox domain
Homeobox_dom ProSiteProfiles Homeobox domain

GOSlim

41 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Orthology molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Orthology molecular function
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
transcription factor binding Orthology molecular function
positive regulation of cell proliferation Orthology biological process
cell differentiation Orthology biological process
regulation of cell proliferation Orthology biological process
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
protein heterodimerization activity Orthology molecular function
chromatin binding Orthology molecular function
neuron development Orthology biological process
system development Orthology biological process
anatomical structure morphogenesis Orthology biological process
animal organ development Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
intracellular part Orthology cellular component
macromolecular complex Orthology cellular component
Notch signaling pathway Orthology biological process
developmental process Orthology biological process
reproductive process Orthology biological process
G2/M transition of mitotic cell cycle Orthology biological process
immune system process Orthology biological process
cell development Orthology biological process
neuron differentiation Orthology biological process
nuclear part Orthology cellular component
central nervous system development Orthology biological process

GO (Orthology)

51 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function
urogenital system development Hs biological process
branching involved in ureteric bud morphogenesis Hs biological process
XY body Hs cellular component
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor complex Hs cellular component
cytoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
steroid biosynthetic process Hs biological process
positive regulation of transcription of Notch receptor target Hs biological process
multicellular organism development Hs biological process
sex differentiation Hs biological process
transcription factor binding Hs molecular function
positive regulation of cell proliferation Hs biological process
animal organ morphogenesis Hs biological process
anterior/posterior pattern specification Hs biological process
proximal/distal pattern formation Hs biological process
positive regulation of G2/M transition of mitotic cell cycle Hs biological process
cell differentiation Hs biological process
regulation of ossification Hs biological process
adrenal gland development Hs biological process
embryonic limb morphogenesis Hs biological process
somatic stem cell population maintenance Hs biological process
embryonic hemopoiesis Hs biological process
regulation of cell proliferation Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of neuron differentiation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
protein heterodimerization activity Hs molecular function
thymus development Hs biological process
embryonic organ development Hs biological process
embryonic skeletal system development Hs biological process
RNA polymerase II transcription factor complex Hs cellular component
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding Hs molecular function
chromatin binding Hs molecular function
adult locomotory behavior Hs biological process
dorsal spinal cord development Hs biological process
neuron development Hs biological process

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 281 2.13e-91
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 281 2.13e-91
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 281 2.13e-91
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 281 2.13e-91
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding Hs molecular function 277 4.10e-90
XY body Hs cellular component 280 4.46e-92
DNA binding Hs molecular function 281 2.13e-91
transcription factor activity, sequence-specific DNA binding Hs molecular function 281 2.13e-91
protein binding Hs molecular function 281 2.13e-91
nucleus Hs cellular component 281 2.13e-91
nucleoplasm Hs cellular component 281 2.13e-91
transcription factor complex Hs cellular component 281 2.13e-91
cytoplasm Hs cellular component 281 2.13e-91
transcription factor binding Hs molecular function 277 4.10e-90
sequence-specific DNA binding Hs molecular function 281 2.13e-91
protein heterodimerization activity Hs molecular function 281 2.13e-91
RNA polymerase II transcription factor complex Hs cellular component 281 2.13e-91

GO (InterProScan)

5 results

GO Term Analysis Type e-value
DNA binding SUPERFAMILY molecular function 5.13E-20
transcription factor activity, sequence-specific DNA binding Pfam molecular function 3.0E-47
nucleus Pfam cellular component 3.0E-47
regulation of transcription, DNA-templated ProSitePatterns biological process
sequence-specific DNA binding ProSitePatterns molecular function