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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S1...'

Gene Card

Best human hits

PABPC1L; TIAL1; TRNAU1AP

Species

P.mammillata

Unique Gene ID

Phmamm.g00004716

Gene Model ID

Phmamm.CG.MTP2014.S173.g04716

Location

S173:104242..108940

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S173.g04716.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

10 results

AHC0AAA76YO18

Plate: Plate_76_O18

AHC0AAA104YC10

Plate: Plate_104_C10

AHC0AAA96YA18

Plate: Plate_96_A18

AHC0AAA172YA13

Plate: Plate_172_A13

AHC0AAA179YG01

Plate: Plate_179_G01

AHC0AAA189YK08

Plate: Plate_189_K08

AHC0AAA191YG18

Plate: Plate_191_G18

AHC0AAA206YO09

Plate: Plate_206_O09

AHC0AAA208YA23

Plate: Plate_208_A23

AHC0AAA253YM16

Plate: Plate_253_M16

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
RRM_dom SMART RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom Pfam RNA recognition motif domain
SECp43_RRM2 CDD SECp43, RNA recognition motif 2
RRM_dom ProSiteProfiles RNA recognition motif domain

GOSlim

12 results

GO Term Annotation Origin Type
nucleic acid binding Orthology molecular function
DNA binding Blast molecular function
RNA binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
cytoplasm Orthology cellular component
lysosome Blast cellular component
extracellular exosome Blast cellular component
regulation of gene expression Orthology biological process
cytoplasmic part Blast cellular component
intracellular non-membrane-bounded organelle Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

6 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
selenocysteine incorporation Hs biological process
nucleic acid binding Hs molecular function
RNA binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
translation Hs biological process

GO (Blast)

11 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleic acid binding Hs molecular function 153 3.67e-45
DNA binding Hs molecular function 56.2 3.95e-09
RNA binding Hs molecular function 153 3.67e-45
nucleus Hs cellular component 153 3.67e-45
nucleoplasm Hs cellular component 56.2 3.95e-09
cytoplasm Hs cellular component 153 3.67e-45
lysosome Hs cellular component 56.2 3.95e-09
cytoplasmic stress granule Hs cellular component 56.2 3.95e-09
AU-rich element binding Hs molecular function 56.2 3.95e-09
intracellular ribonucleoprotein complex Hs cellular component 56.2 3.95e-09
extracellular exosome Hs cellular component 56.2 3.95e-09

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 2.04E-21