IPR Term	Analysis	Definition
AAA_ATPase_CDC48	TIGRFAM	AAA ATPase, CDC48 family
ATPase_AAA_CS	ProSitePatterns	ATPase, AAA-type, conserved site
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
CDC48_domain_2-like_sf	SUPERFAMILY	CDC48 domain 2-like superfamily
CDC4_N-term_subdom	Pfam	CDC48, N-terminal subdomain
Asp_de-COase-like_dom_sf	SUPERFAMILY	Aspartate decarboxylase-like domain superfamily
Vps4_C	Pfam	Vps4 oligomerisation, C-terminal
CDC4_N-term_subdom	SMART	CDC48, N-terminal subdomain
Cdc48_dom2	SMART	CDC48, domain 2
Cdc48_dom2	Pfam	CDC48, domain 2
ATPase_AAA_core	Pfam	ATPase, AAA-type, core
AAA+_ATPase	SMART	AAA+ ATPase domain

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
RNA binding	Orthology	molecular function
receptor binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
extracellular region	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
mitochondrion	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cytosol	Orthology	cellular component
DNA repair	Orthology	biological process
protein folding	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
membrane	Blast	cellular component
protein ubiquitination	Orthology	biological process
hydrolase activity	Orthology	molecular function
ubiquitin protein ligase binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
identical protein binding	Orthology	molecular function
regulation of apoptotic process	Orthology	biological process
myelin sheath	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
ubiquitin-like protein ligase binding	Orthology	molecular function
establishment of protein localization	Orthology	biological process
perinuclear region of cytoplasm	Orthology	cellular component
protein homooligomerization	Orthology	biological process
transmembrane transport	Orthology	biological process
extracellular exosome	Orthology	cellular component
positive regulation of canonical Wnt signaling pathway	Orthology	biological process
intracellular part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
cellular protein modification process	Orthology	biological process
proteolysis	Orthology	biological process
metabolic process	Orthology	biological process
intracellular transport	Orthology	biological process
endopeptidase activity	Orthology	molecular function
positive regulation of hydrolase activity	Orthology	biological process
positive regulation of apoptotic process	Orthology	biological process
binding	Orthology	molecular function
peptidase activity, acting on L-amino acid peptides	Orthology	molecular function
nucleoside-triphosphatase activity	Orthology	molecular function
enzyme binding	Orthology	molecular function
cellular response to stress	Orthology	biological process
response to organic substance	Orthology	biological process
signal transduction	Orthology	biological process
cellular response to organic substance	Orthology	biological process
intracellular protein transport	Orthology	biological process
protein oligomerization	Orthology	biological process
intracellular organelle part	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
endomembrane system	Orthology	cellular component
intracellular organelle lumen	Orthology	cellular component
lysosome	Orthology	cellular component
vacuolar part	Orthology	cellular component
enzyme activator activity	Orthology	molecular function
anion binding	Orthology	molecular function
adenyl ribonucleotide binding	Orthology	molecular function
protein metabolic process	Orthology	biological process
phosphorylation	Orthology	biological process
monovalent inorganic cation transport	Orthology	biological process
macromolecular complex binding	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
phosphate-containing compound metabolic process	Orthology	biological process
nuclear part	Blast	cellular component

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
proteasome complex	Hs	cellular component
RNA binding	Hs	molecular function
receptor binding	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
extracellular region	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
lipid droplet	Hs	cellular component
cytosol	Hs	cellular component
DNA repair	Hs	biological process
double-strand break repair	Hs	biological process
protein folding	Hs	biological process
protein methylation	Hs	biological process
ubiquitin-dependent protein catabolic process	Hs	biological process
NADH metabolic process	Hs	biological process
ER to Golgi vesicle-mediated transport	Hs	biological process
autophagy	Hs	biological process
activation of cysteine-type endopeptidase activity involved in apoptotic process	Hs	biological process
cellular response to DNA damage stimulus	Hs	biological process
lipid binding	Hs	molecular function
proteasomal protein catabolic process	Hs	biological process
positive regulation of mitochondrial membrane potential	Hs	biological process
macroautophagy	Hs	biological process
protein ubiquitination	Hs	biological process
protein deubiquitination	Hs	biological process
hydrolase activity	Hs	molecular function
ATPase activity	Hs	molecular function
protein N-linked glycosylation via asparagine	Hs	biological process
viral genome replication	Hs	biological process
protein phosphatase binding	Hs	molecular function
protein domain specific binding	Hs	molecular function
translesion synthesis	Hs	biological process
ubiquitin-dependent ERAD pathway	Hs	biological process
endoplasmic reticulum unfolded protein response	Hs	biological process
retrograde protein transport, ER to cytosol	Hs	biological process
positive regulation of protein complex assembly	Hs	biological process
polyubiquitin modification-dependent protein binding	Hs	molecular function
ubiquitin protein ligase binding	Hs	molecular function
positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
endosome to lysosome transport via multivesicular body sorting pathway	Hs	biological process
macromolecular complex	Hs	cellular component
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component
protein hexamerization	Hs	biological process
secretory granule lumen	Hs	cellular component
azurophil granule lumen	Hs	cellular component
deubiquitinase activator activity	Hs	molecular function
site of double-strand break	Hs	cellular component
K48-linked polyubiquitin modification-dependent protein binding	Hs	molecular function
ERAD pathway	Hs	biological process
Derlin-1 retrotranslocation complex	Hs	cellular component
MHC class I protein binding	Hs	molecular function
identical protein binding	Hs	molecular function
regulation of apoptotic process	Hs	biological process
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
myelin sheath	Hs	cellular component
intracellular membrane-bounded organelle	Hs	cellular component
ADP binding	Hs	molecular function
ubiquitin-like protein ligase binding	Hs	molecular function
establishment of protein localization	Hs	biological process
positive regulation of protein catabolic process	Hs	biological process
ATP metabolic process	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
protein homooligomerization	Hs	biological process
transmembrane transport	Hs	biological process
extracellular exosome	Hs	cellular component
ER-associated misfolded protein catabolic process	Hs	biological process
positive regulation of canonical Wnt signaling pathway	Hs	biological process
autophagosome maturation	Hs	biological process
positive regulation of oxidative phosphorylation	Hs	biological process
BAT3 complex binding	Hs	molecular function
ficolin-1-rich granule lumen	Hs	cellular component
ATPase complex	Hs	cellular component
ubiquitin-specific protease binding	Hs	molecular function
VCP-NSFL1C complex	Hs	cellular component
positive regulation of ubiquitin-specific protease activity	Hs	biological process
positive regulation of ATP biosynthetic process	Hs	biological process

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	1336	0.0
proteasome complex	Hs	cellular component	1336	0.0
RNA binding	Hs	molecular function	1336	0.0
receptor binding	Hs	molecular function	1336	0.0
protein binding	Hs	molecular function	1336	0.0
ATP binding	Hs	molecular function	1336	0.0
extracellular region	Hs	cellular component	1336	0.0
nucleus	Hs	cellular component	1336	0.0
nucleoplasm	Hs	cellular component	1336	0.0
telomerase holoenzyme complex	Hs	cellular component	462	1.28e-150
nucleolus	Hs	cellular component	462	1.28e-150
cytoplasm	Hs	cellular component	1336	0.0
mitochondrion	Hs	cellular component	547	0.0
endoplasmic reticulum	Hs	cellular component	1336	0.0
endoplasmic reticulum membrane	Hs	cellular component	1336	0.0
lipid droplet	Hs	cellular component	1336	0.0
cytosol	Hs	cellular component	1336	0.0
lipid binding	Hs	molecular function	1336	0.0
membrane	Hs	cellular component	462	1.28e-150
hydrolase activity	Hs	molecular function	1336	0.0
ATPase activity	Hs	molecular function	1336	0.0
protein phosphatase binding	Hs	molecular function	1336	0.0
protein domain specific binding	Hs	molecular function	1336	0.0
polyubiquitin modification-dependent protein binding	Hs	molecular function	1336	0.0
ubiquitin protein ligase binding	Hs	molecular function	1336	0.0
macromolecular complex	Hs	cellular component	1336	0.0
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component	1336	0.0
secretory granule lumen	Hs	cellular component	1336	0.0
azurophil granule lumen	Hs	cellular component	1336	0.0
deubiquitinase activator activity	Hs	molecular function	1336	0.0
site of double-strand break	Hs	cellular component	1336	0.0
K48-linked polyubiquitin modification-dependent protein binding	Hs	molecular function	1336	0.0
Derlin-1 retrotranslocation complex	Hs	cellular component	1336	0.0
MHC class I protein binding	Hs	molecular function	1336	0.0
identical protein binding	Hs	molecular function	1336	0.0
myelin sheath	Hs	cellular component	1336	0.0
intracellular membrane-bounded organelle	Hs	cellular component	1336	0.0
ADP binding	Hs	molecular function	1336	0.0
ubiquitin-like protein ligase binding	Hs	molecular function	1336	0.0
perinuclear region of cytoplasm	Hs	cellular component	1336	0.0
extracellular exosome	Hs	cellular component	1336	0.0
BAT3 complex binding	Hs	molecular function	1336	0.0
ficolin-1-rich granule lumen	Hs	cellular component	1336	0.0
ATPase complex	Hs	cellular component	1336	0.0
preribosome binding	Hs	molecular function	462	1.28e-150
ubiquitin-specific protease binding	Hs	molecular function	1336	0.0
VCP-NSFL1C complex	Hs	cellular component	1336	0.0

GO Term	Analysis	Type	e-value
ATP binding	Pfam	molecular function	9.4E-47
hydrolase activity	TIGRFAM	molecular function	1.2E-254