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Gene Card

Best human hits

RPS4X; RPS4Y1; RPS4Y2

Species

P.mammillata

Unique Gene ID

Phmamm.g00004337

Gene Model ID

Phmamm.CG.MTP2014.S155.g04337

Location

S155:9296..12639

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S155.g04337.01.t
Phmamm.CG.MTP2014.S155.g04337.02.t
Phmamm.CG.MTP2014.S155.g04337.03.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

14 results

AHC0AAA5YB04

Plate: Plate_5_B04

AHC0AAA8YH18

Plate: Plate_8_H18

AHC0AAA72YD18

Plate: Plate_72_D18

AHC0AAA110YB06

Plate: Plate_110_B06

AHC0AAA116YA07

Plate: Plate_116_A07

AHC0AAA88YA11

Plate: Plate_88_A11

AHC0AAA88YG13

Plate: Plate_88_G13

AHC0AAA95YI08

Plate: Plate_95_I08

AHC0AAA198YN15

Plate: Plate_198_N15

AHC0AAA223YD21

Plate: Plate_223_D21

AHC0AAA225YA17

Plate: Plate_225_A17

AHC0AAA230YF19

Plate: Plate_230_F19

AHC0AAA232YC11

Plate: Plate_232_C11

AHC0AAA248YE15

Plate: Plate_248_E15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

15 results

IPR Term Analysis Definition
Ribosomal_S4e_central_region ProDom Ribosomal protein S4e, central region
Ribosomal_S4e_central_sf Gene3D Ribosomal protein S4e, central domain superfamily
KOW Pfam KOW
Rib_L2_dom2 Gene3D Ribosomal protein L2, domain 2
40S_S4_C Pfam 40S ribosomal protein S4, C-terminal domain
Ribosomal_S4e PANTHER Ribosomal protein S4e
Ribosomal_S4e_central_region Pfam Ribosomal protein S4e, central region
Ribosomal_S4e_N Pfam Ribosomal protein S4e, N-terminal
S4_RNA-bd SMART RNA-binding S4 domain
S4_RNA-bd ProSiteProfiles RNA-binding S4 domain
S4_RNA-bd CDD RNA-binding S4 domain
Ribosomal_S4e_N_CS ProSitePatterns Ribosomal protein S4e, N-terminal, conserved site
Ribosomal_S4e Hamap Ribosomal protein S4e
Ribosomal_S4e PIRSF Ribosomal protein S4e
S4_RNA-bd Pfam RNA-binding S4 domain

GOSlim

23 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
RNA binding Orthology molecular function
structural constituent of ribosome Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
ribosome Orthology cellular component
focal adhesion Orthology cellular component
translational initiation Orthology biological process
SRP-dependent cotranslational protein targeting to membrane Orthology biological process
multicellular organism development Orthology biological process
positive regulation of cell proliferation Orthology biological process
membrane Orthology cellular component
extracellular exosome Orthology cellular component
macromolecular complex Orthology cellular component
RNA processing Orthology biological process
intracellular organelle part Orthology cellular component
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
positive regulation of gene expression Orthology biological process

GO (Orthology)

26 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
RNA binding Hs molecular function
structural constituent of ribosome Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
ribosome Hs cellular component
polysome Hs cellular component
focal adhesion Hs cellular component
rRNA processing Hs biological process
translation Hs biological process
translational initiation Hs biological process
SRP-dependent cotranslational protein targeting to membrane Hs biological process
multicellular organism development Hs biological process
positive regulation of cell proliferation Hs biological process
small ribosomal subunit Hs cellular component
membrane Hs cellular component
rRNA binding Hs molecular function
cytosolic small ribosomal subunit Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
cytoplasmic ribonucleoprotein granule Hs cellular component
positive regulation of translation Hs biological process
extracellular exosome Hs cellular component

GO (Blast)

18 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 432 2.58e-155
structural constituent of ribosome Hs molecular function 432 2.58e-155
protein binding Hs molecular function 432 2.58e-155
intracellular Hs cellular component 432 2.58e-155
nucleus Hs cellular component 425 2.26e-152
nucleoplasm Hs cellular component 432 2.58e-155
cytoplasm Hs cellular component 432 2.58e-155
cytosol Hs cellular component 432 2.58e-155
ribosome Hs cellular component 432 2.58e-155
polysome Hs cellular component 432 2.58e-155
focal adhesion Hs cellular component 432 2.58e-155
small ribosomal subunit Hs cellular component 432 2.58e-155
membrane Hs cellular component 432 2.58e-155
rRNA binding Hs molecular function 432 2.58e-155
cytosolic small ribosomal subunit Hs cellular component 432 2.58e-155
intracellular ribonucleoprotein complex Hs cellular component 432 2.58e-155
cytoplasmic ribonucleoprotein granule Hs cellular component 432 2.58e-155
extracellular exosome Hs cellular component 432 2.58e-155

GO (InterProScan)

5 results

GO Term Analysis Type e-value
RNA binding Pfam molecular function 6.1E-7
structural constituent of ribosome PANTHER molecular function 1.2E-144
intracellular PANTHER cellular component 1.2E-144
ribosome PANTHER cellular component 1.2E-144
translation PANTHER biological process 1.2E-144

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