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GENE CARD

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  1. Gene 'Phmamm.CG.MTP2014.S3...'

Gene Card

Best human hits

SHMT1; SHMT2

Species

P.mammillata

Unique Gene ID

Phmamm.g00004250

Gene Model ID

Phmamm.CG.MTP2014.S150.g04250

Location

S150:148478..154008

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

23 results

AHC0AAA17YE03

Plate: Plate_17_E03

AHC0AAA18YH20

Plate: Plate_18_H20

AHC0AAA25YM06

Plate: Plate_25_M06

AHC0AAA8YP21

Plate: Plate_8_P21

AHC0AAA43YA01

Plate: Plate_43_A01

AHC0AAA45YH20

Plate: Plate_45_H20

AHC0AAA45YH21

Plate: Plate_45_H21

AHC0AAA61YH04

Plate: Plate_61_H04

AHC0AAA64YB13

Plate: Plate_64_B13

AHC0AAA68YD20

Plate: Plate_68_D20

AHC0AAA115YL14

Plate: Plate_115_L14

AHC0AAA83YP21

Plate: Plate_83_P21

AHC0AAA89YB08

Plate: Plate_89_B08

AHC0AAA165YK12

Plate: Plate_165_K12

AHC0AAA166YD03

Plate: Plate_166_D03

AHC0AAA168YF19

Plate: Plate_168_F19

AHC0AAA173YO21

Plate: Plate_173_O21

AHC0AAA177YE08

Plate: Plate_177_E08

AHC0AAA180YL04

Plate: Plate_180_L04

AHC0AAA206YC01

Plate: Plate_206_C01

AHC0AAA211YF10

Plate: Plate_211_F10

AHC0AAA223YJ12

Plate: Plate_223_J12

AHC0AAA225YA11

Plate: Plate_225_A11

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Ser_HO-MeTrfase CDD Serine hydroxymethyltransferase
PyrdxlP-dep_Trfase SUPERFAMILY Pyridoxal phosphate-dependent transferase
PyrdxlP-dep_Trfase_dom1 Gene3D Pyridoxal phosphate-dependent transferase domain 1
Ser_HO-MeTrfase Hamap Serine hydroxymethyltransferase
Ser_HO-MeTrfase_PLP_BS ProSitePatterns Serine hydroxymethyltransferase, pyridoxal phosphate binding site
PyrdxlP-dep_Trfase_major Gene3D Pyridoxal phosphate-dependent transferase, major domain
Ser_HO-MeTrfase PANTHER Serine hydroxymethyltransferase
Ser_HO-MeTrfase PIRSF Serine hydroxymethyltransferase

GOSlim

38 results

GO Term Annotation Origin Type
chromatin binding Blast molecular function
catalytic activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Orthology cellular component
mitochondrion Orthology cellular component
mitochondrial inner membrane Blast cellular component
mitochondrial matrix Blast cellular component
cytosol Orthology cellular component
microtubule cytoskeleton Blast cellular component
membrane Blast cellular component
transferase activity Orthology molecular function
identical protein binding Orthology molecular function
protein homodimerization activity Orthology molecular function
extracellular exosome Orthology cellular component
negative regulation of gene expression Orthology biological process
nucleic acid binding Orthology molecular function
peptidase activity, acting on L-amino acid peptides Orthology molecular function
phosphate-containing compound metabolic process Orthology biological process
cellular metabolic process Orthology biological process
cellular biosynthetic process Orthology biological process
nucleobase-containing compound metabolic process Orthology biological process
small molecule binding Orthology molecular function
anion binding Orthology molecular function
heterocyclic compound binding Orthology molecular function
organic cyclic compound binding Orthology molecular function
coenzyme binding Orthology molecular function
cellular aromatic compound metabolic process Orthology biological process
RNA binding Orthology molecular function
protein oligomerization Orthology biological process
protein homooligomerization Orthology biological process
cation binding Orthology molecular function
mitochondrial envelope Blast cellular component
intracellular organelle lumen Blast cellular component
metabolic process Blast biological process
intracellular non-membrane-bounded organelle Blast cellular component
nuclear part Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

33 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
translation repressor activity, nucleic acid binding Hs molecular function
catalytic activity Hs molecular function
glycine hydroxymethyltransferase activity Hs molecular function
thiol-dependent ubiquitin-specific protease activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
cytoplasm Hs cellular component
mitochondrion Hs cellular component
cytosol Hs cellular component
dTMP biosynthetic process Hs biological process
glycine metabolic process Hs biological process
glycine biosynthetic process Hs biological process
L-serine metabolic process Hs biological process
one-carbon metabolic process Hs biological process
L-allo-threonine aldolase activity Hs molecular function
purine nucleobase biosynthetic process Hs biological process
protein deubiquitination Hs biological process
amino acid binding Hs molecular function
transferase activity Hs molecular function
negative regulation of translation Hs biological process
glycine biosynthetic process from serine Hs biological process
pyridoxal phosphate binding Hs molecular function
tetrahydrofolate interconversion Hs biological process
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
carnitine biosynthetic process Hs biological process
tetrahydrofolate metabolic process Hs biological process
folic acid metabolic process Hs biological process
mRNA 5'-UTR binding Hs molecular function
protein tetramerization Hs biological process
protein homotetramerization Hs biological process
extracellular exosome Hs cellular component
serine binding Hs molecular function

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
translation repressor activity, nucleic acid binding Hs molecular function 657 0.0
chromatin binding Hs molecular function 608 0.0
catalytic activity Hs molecular function 657 0.0
glycine hydroxymethyltransferase activity Hs molecular function 657 0.0
thiol-dependent ubiquitin-specific protease activity Hs molecular function 657 0.0
protein binding Hs molecular function 657 0.0
nucleus Hs cellular component 657 0.0
cytoplasm Hs cellular component 657 0.0
mitochondrion Hs cellular component 657 0.0
mitochondrial inner membrane Hs cellular component 608 0.0
mitochondrial intermembrane space Hs cellular component 608 0.0
mitochondrial matrix Hs cellular component 608 0.0
cytosol Hs cellular component 657 0.0
methyltransferase activity Hs molecular function 608 0.0
L-allo-threonine aldolase activity Hs molecular function 657 0.0
microtubule cytoskeleton Hs cellular component 608 0.0
membrane Hs cellular component 608 0.0
amino acid binding Hs molecular function 657 0.0
transferase activity Hs molecular function 657 0.0
pyridoxal phosphate binding Hs molecular function 657 0.0
mitochondrial nucleoid Hs cellular component 608 0.0
identical protein binding Hs molecular function 657 0.0
protein homodimerization activity Hs molecular function 657 0.0
mRNA 5'-UTR binding Hs molecular function 657 0.0
extracellular exosome Hs cellular component 657 0.0
BRISC complex Hs cellular component 608 0.0
serine binding Hs molecular function 657 0.0

GO (InterProScan)

5 results

GO Term Analysis Type e-value
catalytic activity Gene3D molecular function 5.4E-211
glycine hydroxymethyltransferase activity CDD molecular function 0.0
glycine biosynthetic process from serine CDD biological process 0.0
pyridoxal phosphate binding CDD molecular function 0.0
tetrahydrofolate interconversion CDD biological process 0.0