Aniseed - Gene card

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Genoscope Yasuo Villefranche

62 results

AHC0AAA266YE14

Plate: Plate_266_E14

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
TFIID_TAF12_dom	ProDom	Transcription initiation factor TFIID subunit 12 domain
TFIID_TAF12_dom	CDD	Transcription initiation factor TFIID subunit 12 domain
TAF12	PANTHER	Transcription initiation factor TFIID subunit 12
Histone-fold	SUPERFAMILY	Histone-fold
Histone-fold	Gene3D	Histone-fold
TFIID_TAF12_dom	Pfam	Transcription initiation factor TFIID subunit 12 domain

GOSlim

18 results

GO Term	Annotation Origin	Type
DNA binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
transcription coactivator activity	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
DNA-templated transcription, initiation	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
transcription factor binding	Orthology	molecular function
protein heterodimerization activity	Orthology	molecular function
nucleoplasm part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
organelle organization	Orthology	biological process
transferase activity	Orthology	molecular function
cellular protein modification process	Orthology	biological process

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
SAGA complex	Hs	cellular component
RNA polymerase II activating transcription factor binding	Hs	molecular function
DNA binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
transcription coactivator activity	Hs	molecular function
histone acetyltransferase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
transcription factor TFIID complex	Hs	cellular component
transcription, DNA-templated	Hs	biological process
DNA-templated transcription, initiation	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
transcription factor binding	Hs	molecular function
TBP-class protein binding	Hs	molecular function
STAGA complex	Hs	cellular component
transcription factor TFTC complex	Hs	cellular component
histone H3 acetylation	Hs	biological process
SLIK (SAGA-like) complex	Hs	cellular component
protein heterodimerization activity	Hs	molecular function
positive regulation of sequence-specific DNA binding transcription factor activity	Hs	biological process
RNA polymerase II transcriptional preinitiation complex assembly	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
SAGA complex	Hs	cellular component	166	3.85e-52
RNA polymerase II activating transcription factor binding	Hs	molecular function	166	3.85e-52
DNA binding	Hs	molecular function	166	3.85e-52
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	166	3.85e-52
transcription coactivator activity	Hs	molecular function	166	3.85e-52
histone acetyltransferase activity	Hs	molecular function	166	3.85e-52
protein binding	Hs	molecular function	166	3.85e-52
nucleus	Hs	cellular component	166	3.85e-52
nucleoplasm	Hs	cellular component	166	3.85e-52
transcription factor TFIID complex	Hs	cellular component	166	3.85e-52
transcription factor binding	Hs	molecular function	166	3.85e-52
TBP-class protein binding	Hs	molecular function	166	3.85e-52
STAGA complex	Hs	cellular component	166	3.85e-52
transcription factor TFTC complex	Hs	cellular component	166	3.85e-52
SLIK (SAGA-like) complex	Hs	cellular component	166	3.85e-52
protein heterodimerization activity	Hs	molecular function	166	3.85e-52

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
SAGA complex	PANTHER	cellular component	8.4E-61
transcription factor TFIID complex	PANTHER	cellular component	8.4E-61
DNA-templated transcription, initiation	CDD	biological process	1.14518E-31
SLIK (SAGA-like) complex	PANTHER	cellular component	8.4E-61
protein heterodimerization activity	Gene3D	molecular function	8.7E-32

Gene Card

Best human hits

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Transcript Models and Sequences