- Gene 'Phmamm.CG.MTP2014.S1...'
Gene Card
Best human hits
RPUSD1; RPUSD3; RPUSD4
Species
Unique Gene ID
Phmamm.g00004100
Gene Model ID
Phmamm.CG.MTP2014.S142.g04100
Location
S142:206881..211588
Transcript Models and Sequences
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
4 results
| IPR Term | Analysis | Definition |
|---|---|---|
| PsdUridine_synth_RsuA/RluD | CDD | Pseudouridine synthase, RsuA/RluB/C/D/E/F |
| PsdUridine_synth_RsuA/RluD | Pfam | Pseudouridine synthase, RsuA/RluB/C/D/E/F |
| PsdUridine_synth_cat_dom_sf | SUPERFAMILY | Pseudouridine synthase, catalytic domain superfamily |
| PsdUridine_synth_RluC/D_CS | ProSitePatterns | Pseudouridine synthase, RluC/RluD, conserved site |
GOSlim
8 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| mitochondrion | Orthology | cellular component |
| mitochondrial matrix | Orthology | cellular component |
| RNA metabolic process | Orthology | biological process |
| RNA processing | Orthology | biological process |
| catalytic activity | Orthology | molecular function |
| hydrolase activity | Orthology | molecular function |
GO (Orthology)
11 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| pseudouridine synthesis | Hs | biological process |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| mitochondrion | Hs | cellular component |
| mitochondrial matrix | Hs | cellular component |
| tRNA processing | Hs | biological process |
| RNA modification | Hs | biological process |
| pseudouridine synthase activity | Hs | molecular function |
| isomerase activity | Hs | molecular function |
| deaminase activity | Hs | molecular function |
| tRNA pseudouridine synthesis | Hs | biological process |
GO (Blast)
7 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| RNA binding | Hs | molecular function | 222 | 1.85e-68 |
| protein binding | Hs | molecular function | 222 | 1.85e-68 |
| mitochondrion | Hs | cellular component | 222 | 1.85e-68 |
| mitochondrial matrix | Hs | cellular component | 222 | 1.85e-68 |
| pseudouridine synthase activity | Hs | molecular function | 222 | 1.85e-68 |
| isomerase activity | Hs | molecular function | 222 | 1.85e-68 |
| deaminase activity | Hs | molecular function | 222 | 1.85e-68 |
GO (InterProScan)
4 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| pseudouridine synthesis | CDD | biological process | 3.29719E-39 |
| RNA binding | CDD | molecular function | 3.29719E-39 |
| RNA modification | CDD | biological process | 3.29719E-39 |
| pseudouridine synthase activity | CDD | molecular function | 3.29719E-39 |
