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GENE CARD

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Gene Card

Best human hits

CDC40; WDR25; WDR5

Species

P.mammillata

Unique Gene ID

Phmamm.g00004047

Gene Model ID

Phmamm.CG.MTP2014.S140.g04047

Location

S140:81425..86253

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S140.g04047.01.t
Phmamm.CG.MTP2014.S140.g04047.02.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

18 results

AHC0AAA15YM15

Plate: Plate_15_M15

AHC0AAA5YL04

Plate: Plate_5_L04

AHC0AAA7YP15

Plate: Plate_7_P15

AHC0AAA8YB13

Plate: Plate_8_B13

AHC0AAA47YB04

Plate: Plate_47_B04

AHC0AAA67YD15

Plate: Plate_67_D15

AHC0AAA101YD03

Plate: Plate_101_D03

AHC0AAA103YD11

Plate: Plate_103_D11

AHC0AAA117YG22

Plate: Plate_117_G22

AHC0AAA126YI05

Plate: Plate_126_I05

AHC0AAA141YC07

Plate: Plate_141_C07

AHC0AAA166YC16

Plate: Plate_166_C16

AHC0AAA190YO05

Plate: Plate_190_O05

AHC0AAA207YG07

Plate: Plate_207_G07

AHC0AAA227YL17

Plate: Plate_227_L17

AHC0AAA229YE01

Plate: Plate_229_E01

AHC0AAA246YL04

Plate: Plate_246_L04

AHC0AAA262YF15

Plate: Plate_262_F15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
WD40/YVTN_repeat-like_dom_sf Gene3D WD40/YVTN repeat-like-containing domain superfamily
PRPF17 PANTHER Pre-mRNA-processing factor 17
WD40_repeat ProSiteProfiles WD40 repeat
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily
WD40_repeat_dom ProSiteProfiles WD40-repeat-containing domain
WD40_repeat_CS ProSitePatterns WD40 repeat, conserved site
WD40_repeat Pfam WD40 repeat
WD40_repeat SMART WD40 repeat
G-protein_beta_WD-40_rep PRINTS G-protein beta WD-40 repeat

GOSlim

22 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
RNA binding Orthology molecular function
protein binding Orthology molecular function
intracellular Blast cellular component
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
transcription from RNA polymerase II promoter Orthology biological process
organic substance transport Orthology biological process
intracellular transport Orthology biological process
intracellular protein transport Orthology biological process
gene expression Orthology biological process
nucleoplasm part Blast cellular component
organelle organization Blast biological process
transferase activity Blast molecular function
cellular protein modification process Blast biological process
cell projection part Blast cellular component
plasma membrane region Blast cellular component
microtubule organizing center Blast cellular component

GO (Orthology)

14 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
mRNA splicing, via spliceosome Hs biological process
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
termination of RNA polymerase II transcription Hs biological process
mRNA processing Hs biological process
RNA export from nucleus Hs biological process
mRNA export from nucleus Hs biological process
RNA splicing Hs biological process
mRNA 3'-end processing Hs biological process
U2-type catalytic step 2 spliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
histone acetyltransferase complex Hs cellular component 134 1.33e-34
RNA binding Hs molecular function 758 0.0
protein binding Hs molecular function 758 0.0
intracellular Hs cellular component 134 1.33e-34
nucleus Hs cellular component 758 0.0
nucleoplasm Hs cellular component 758 0.0
Ada2/Gcn5/Ada3 transcription activator complex Hs cellular component 134 1.33e-34
spliceosomal complex Hs cellular component 758 0.0
histone-lysine N-methyltransferase activity Hs molecular function 134 1.33e-34
methylated histone binding Hs molecular function 134 1.33e-34
histone methyltransferase complex Hs cellular component 134 1.33e-34
ciliary basal body Hs cellular component 134 1.33e-34
histone methyltransferase activity (H3-K4 specific) Hs molecular function 134 1.33e-34
histone acetyltransferase activity (H4-K5 specific) Hs molecular function 134 1.33e-34
histone acetyltransferase activity (H4-K8 specific) Hs molecular function 134 1.33e-34
MLL3/4 complex Hs cellular component 134 1.33e-34
histone acetyltransferase activity (H4-K16 specific) Hs molecular function 134 1.33e-34
Set1C/COMPASS complex Hs cellular component 134 1.33e-34
U2-type catalytic step 2 spliceosome Hs cellular component 758 0.0
catalytic step 2 spliceosome Hs cellular component 758 0.0
MLL1 complex Hs cellular component 134 1.33e-34

GO (InterProScan)

3 results

GO Term Analysis Type e-value
mRNA splicing, via spliceosome PANTHER biological process 6.8E-256
protein binding Gene3D molecular function 8.2E-96
catalytic step 2 spliceosome PANTHER cellular component 6.8E-256

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