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GENE CARD

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Gene Card

Best human hits

DDX1; DDX17; DDX50

Species

P.mammillata

Unique Gene ID

Phmamm.g00003866

Gene Model ID

Phmamm.CG.MTP2014.S131.g03866

Location

S131:68633..77708

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S131.g03866.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

28 results

AHC0AAA21YA13

Plate: Plate_21_A13

AHC0AAA22YL14

Plate: Plate_22_L14

AHC0AAA26YA04

Plate: Plate_26_A04

AHC0AAA29YP24

Plate: Plate_29_P24

AHC0AAA59YM02

Plate: Plate_59_M02

AHC0AAA69YM21

Plate: Plate_69_M21

AHC0AAA73YD06

Plate: Plate_73_D06

AHC0AAA103YI01

Plate: Plate_103_I01

AHC0AAA110YB16

Plate: Plate_110_B16

AHC0AAA111YI15

Plate: Plate_111_I15

AHC0AAA115YO11

Plate: Plate_115_O11

AHC0AAA131YP14

Plate: Plate_131_P14

AHC0AAA144YL02

Plate: Plate_144_L02

AHC0AAA146YC22

Plate: Plate_146_C22

AHC0AAA150YK12

Plate: Plate_150_K12

AHC0AAA82YC13

Plate: Plate_82_C13

AHC0AAA84YD15

Plate: Plate_84_D15

AHC0AAA88YD10

Plate: Plate_88_D10

AHC0AAA96YG18

Plate: Plate_96_G18

AHC0AAA173YD24

Plate: Plate_173_D24

AHC0AAA183YC23

Plate: Plate_183_C23

AHC0AAA205YI19

Plate: Plate_205_I19

AHC0AAA214YM01

Plate: Plate_214_M01

AHC0AAA220YJ20

Plate: Plate_220_J20

AHC0AAA234YB22

Plate: Plate_234_B22

AHC0AAA250YP11

Plate: Plate_250_P11

AHC0AAA254YN12

Plate: Plate_254_N12

AHC0AAA263YI02

Plate: Plate_263_I02

WashU Genome Browser

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term Analysis Definition
ConA-like_dom_sf SUPERFAMILY Concanavalin A-like lectin/glucanase domain superfamily
Helicase_C Pfam Helicase, C-terminal
B30.2/SPRY ProSiteProfiles B30.2/SPRY domain
P-loop_NTPase SUPERFAMILY P-loop containing nucleoside triphosphate hydrolase
Helicase_ATP-bd ProSiteProfiles Helicase superfamily 1/2, ATP-binding domain
RNA_helicase_DEAD_Q_motif ProSiteProfiles RNA helicase, DEAD-box type, Q motif
Helicase_C ProSiteProfiles Helicase, C-terminal
SPRY_dom SMART SPRY domain
DEAD/DEAH_box_helicase_dom Pfam DEAD/DEAH box helicase domain
Helicase_C SMART Helicase, C-terminal
Helicase_C CDD Helicase, C-terminal
SPRY_dom Pfam SPRY domain
Helicase_ATP-bd SMART Helicase superfamily 1/2, ATP-binding domain

GOSlim

37 results

GO Term Annotation Origin Type
nucleotide binding Orthology molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
transcription cofactor activity Orthology molecular function
transcription coactivator activity Blast molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
ATP binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
plasma membrane Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
RNA processing Orthology biological process
mRNA processing Orthology biological process
multicellular organism development Orthology biological process
RNA splicing Orthology biological process
membrane Orthology cellular component
nuclear speck Blast cellular component
hydrolase activity Orthology molecular function
mRNA splicing, via spliceosome Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
DNA repair Orthology biological process
regulation of gene expression Orthology biological process
translational initiation Orthology biological process
cytoplasmic part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
macromolecular complex Orthology cellular component
RNA metabolic process Orthology biological process
organelle organization Orthology biological process
response to organic substance Orthology biological process
nuclear body Orthology cellular component
intracellular part Orthology cellular component

GO (Orthology)

42 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
nucleotide binding Hs molecular function
spliceosomal complex assembly Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
transcription cofactor activity Hs molecular function
RNA binding Hs molecular function
RNA helicase activity Hs molecular function
double-stranded RNA binding Hs molecular function
ATP-dependent RNA helicase activity Hs molecular function
helicase activity Hs molecular function
nuclease activity Hs molecular function
exonuclease activity Hs molecular function
protein binding Hs molecular function
ATP binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
double-strand break repair Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
tRNA splicing, via endonucleolytic cleavage and ligation Hs biological process
mRNA processing Hs biological process
regulation of translational initiation Hs biological process
multicellular organism development Hs biological process
ATP-dependent helicase activity Hs molecular function
tRNA processing Hs biological process
poly(A) binding Hs molecular function
response to virus Hs biological process
cytoplasmic stress granule Hs cellular component
RNA secondary structure unwinding Hs biological process
membrane Hs cellular component
hydrolase activity Hs molecular function
intracellular ribonucleoprotein complex Hs cellular component
DNA duplex unwinding Hs biological process
DNA/RNA helicase activity Hs molecular function
response to exogenous dsRNA Hs biological process
cleavage body Hs cellular component
tRNA-splicing ligase complex Hs cellular component
nucleic acid phosphodiester bond hydrolysis Hs biological process

GO (Blast)

32 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nucleotide binding Hs molecular function 916 0.0
nucleic acid binding Hs molecular function 916 0.0
DNA binding Hs molecular function 916 0.0
chromatin binding Hs molecular function 916 0.0
transcription cofactor activity Hs molecular function 916 0.0
transcription coactivator activity Hs molecular function 130 1.53e-31
RNA binding Hs molecular function 916 0.0
RNA helicase activity Hs molecular function 916 0.0
double-stranded RNA binding Hs molecular function 916 0.0
ATP-dependent RNA helicase activity Hs molecular function 916 0.0
helicase activity Hs molecular function 916 0.0
nuclease activity Hs molecular function 916 0.0
exonuclease activity Hs molecular function 916 0.0
protein binding Hs molecular function 916 0.0
ATP binding Hs molecular function 916 0.0
nucleus Hs cellular component 916 0.0
nucleoplasm Hs cellular component 916 0.0
nucleolus Hs cellular component 916 0.0
cytoplasm Hs cellular component 916 0.0
cytosol Hs cellular component 916 0.0
plasma membrane Hs cellular component 130 2.39e-31
ATP-dependent helicase activity Hs molecular function 916 0.0
poly(A) binding Hs molecular function 916 0.0
RNA-dependent ATPase activity Hs molecular function 130 1.53e-31
cytoplasmic stress granule Hs cellular component 916 0.0
membrane Hs cellular component 916 0.0
nuclear speck Hs cellular component 130 1.53e-31
hydrolase activity Hs molecular function 916 0.0
intracellular ribonucleoprotein complex Hs cellular component 916 0.0
DNA/RNA helicase activity Hs molecular function 916 0.0
cleavage body Hs cellular component 916 0.0
tRNA-splicing ligase complex Hs cellular component 916 0.0

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding Pfam molecular function 5.7E-62
protein binding SMART molecular function 1.3E-23
ATP binding Pfam molecular function 5.7E-62