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Gene Card

Best human hits

HACE1; HUWE1; UBR5

Species

P.mammillata

Unique Gene ID

Phmamm.g00003537

Gene Model ID

Phmamm.CG.MTP2014.S116.g03537

Location

S116:165929..174761

Transcript Models and Sequences

  Phmamm.CG.MTP2014.S116.g03537.01.t

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

18 results

AHC0AAA16YA13

Plate: Plate_16_A13

AHC0AAA32YL05

Plate: Plate_32_L05

AHC0AAA35YI05

Plate: Plate_35_I05

AHC0AAA43YC20

Plate: Plate_43_C20

AHC0AAA47YP07

Plate: Plate_47_P07

AHC0AAA117YH15

Plate: Plate_117_H15

AHC0AAA117YK03

Plate: Plate_117_K03

AHC0AAA127YE10

Plate: Plate_127_E10

AHC0AAA142YL08

Plate: Plate_142_L08

AHC0AAA87YE20

Plate: Plate_87_E20

AHC0AAA165YL24

Plate: Plate_165_L24

AHC0AAA167YL13

Plate: Plate_167_L13

AHC0AAA185YN08

Plate: Plate_185_N08

AHC0AAA208YJ13

Plate: Plate_208_J13

AHC0AAA216YB07

Plate: Plate_216_B07

AHC0AAA228YO15

Plate: Plate_228_O15

AHC0AAA237YJ15

Plate: Plate_237_J15

AHC0AAA259YB03

Plate: Plate_259_B03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
PABP_HYD Pfam Polyadenylate-binding protein/Hyperplastic disc protein
PABP_HYD SMART Polyadenylate-binding protein/Hyperplastic disc protein
HECT_dom Pfam HECT domain
HECT_dom SMART HECT domain
Hect_E3_ubiquitin_ligase SUPERFAMILY HECT, E3 ligase catalytic domain
PABP_HYD ProSiteProfiles Polyadenylate-binding protein/Hyperplastic disc protein
HECT_dom ProSiteProfiles HECT domain
PABP-dom SUPERFAMILY PABC (PABP) domain

GOSlim

26 results

GO Term Annotation Origin Type
Golgi membrane Blast cellular component
DNA binding Blast molecular function
RNA binding Blast molecular function
ubiquitin-protein transferase activity Blast molecular function
binding Blast molecular function
protein binding Blast molecular function
extracellular region Blast cellular component
nucleus Blast cellular component
nucleoplasm Blast cellular component
cytoplasm Blast cellular component
endoplasmic reticulum Blast cellular component
Golgi apparatus Blast cellular component
cytosol Blast cellular component
zinc ion binding Blast molecular function
membrane Blast cellular component
nuclear body Blast cellular component
transferase activity Blast molecular function
macromolecular complex Blast cellular component
metal ion binding Blast molecular function
perinuclear region of cytoplasm Blast cellular component
extracellular exosome Blast cellular component
enzyme binding Blast molecular function
intracellular organelle part Blast cellular component
cytoplasmic vesicle Blast cellular component
endomembrane system Blast cellular component
intracellular organelle lumen Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

29 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
Golgi membrane Hs cellular component 123 1.61e-28
DNA binding Hs molecular function 117 2.38e-26
RNA binding Hs molecular function 628 0.0
ubiquitin-protein transferase activity Hs molecular function 628 0.0
binding Hs molecular function 117 2.38e-26
protein binding Hs molecular function 628 0.0
extracellular region Hs cellular component 117 2.38e-26
nucleus Hs cellular component 628 0.0
nucleoplasm Hs cellular component 628 0.0
cytoplasm Hs cellular component 123 1.61e-28
endoplasmic reticulum Hs cellular component 123 1.61e-28
Golgi apparatus Hs cellular component 123 1.61e-28
cytosol Hs cellular component 628 0.0
zinc ion binding Hs molecular function 628 0.0
membrane Hs cellular component 628 0.0
nuclear body Hs cellular component 123 1.61e-28
transferase activity Hs molecular function 628 0.0
Rab GTPase binding Hs molecular function 123 1.61e-28
Golgi cisterna membrane Hs cellular component 123 1.61e-28
macromolecular complex Hs cellular component 628 0.0
ubiquitin-ubiquitin ligase activity Hs molecular function 628 0.0
secretory granule lumen Hs cellular component 117 2.38e-26
ubiquitin binding Hs molecular function 628 0.0
metal ion binding Hs molecular function 628 0.0
Rac GTPase binding Hs molecular function 123 1.61e-28
perinuclear region of cytoplasm Hs cellular component 628 0.0
ubiquitin protein ligase activity Hs molecular function 628 0.0
extracellular exosome Hs cellular component 117 2.38e-26
ficolin-1-rich granule lumen Hs cellular component 117 2.38e-26

GO (InterProScan)

2 results

GO Term Analysis Type e-value
RNA binding SMART molecular function 6.8E-20
ubiquitin-protein transferase activity SMART molecular function 1.6E-90

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