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GENE CARD

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  1. Gene 'Harore.CG.MTP2014.S1...'

Gene Card

Best human hits

GAR1

Species

P.mammillata

Unique Gene ID

Phmamm.g00013715

Gene Model ID

Phmamm.CG.MTP2014.S1111.g13715

Location

S1111:17984..18840

External Database Gene Card

External database links

No result

Collections

Genoscope Yasuo Villefranche

27 results

AHC0AAA29YA17

Plate: Plate_29_A17

AHC0AAA29YM04

Plate: Plate_29_M04

AHC0AAA37YP09

Plate: Plate_37_P09

AHC0AAA43YE08

Plate: Plate_43_E08

AHC0AAA49YI03

Plate: Plate_49_I03

AHC0AAA62YH21

Plate: Plate_62_H21

AHC0AAA63YJ21

Plate: Plate_63_J21

AHC0AAA70YC16

Plate: Plate_70_C16

AHC0AAA76YB09

Plate: Plate_76_B09

AHC0AAA104YJ07

Plate: Plate_104_J07

AHC0AAA115YN22

Plate: Plate_115_N22

AHC0AAA138YG15

Plate: Plate_138_G15

AHC0AAA142YP01

Plate: Plate_142_P01

AHC0AAA142YP24

Plate: Plate_142_P24

AHC0AAA90YJ05

Plate: Plate_90_J05

AHC0AAA165YL01

Plate: Plate_165_L01

AHC0AAA167YO13

Plate: Plate_167_O13

AHC0AAA173YB07

Plate: Plate_173_B07

AHC0AAA183YB03

Plate: Plate_183_B03

AHC0AAA192YL03

Plate: Plate_192_L03

AHC0AAA200YN22

Plate: Plate_200_N22

AHC0AAA211YO11

Plate: Plate_211_O11

AHC0AAA215YL15

Plate: Plate_215_L15

AHC0AAA242YD16

Plate: Plate_242_D16

AHC0AAA243YN24

Plate: Plate_243_N24

AHC0AAA244YL23

Plate: Plate_244_L23

AHC0AAA259YN05

Plate: Plate_259_N05

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Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
H/ACA_rnp_Gar1 ProDom H/ACA ribonucleoprotein complex, subunit Gar1
Gar1/Naf1_Cbf5-bd_sf Gene3D H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain
H/ACA_rnp_Gar1/Naf1 Pfam H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
Transl_B-barrel_sf SUPERFAMILY Translation protein, beta-barrel domain superfamily
H/ACA_rnp_Gar1 PANTHER H/ACA ribonucleoprotein complex, subunit Gar1

GOSlim

15 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
RNA processing Orthology biological process
intracellular non-membrane-bounded organelle Orthology cellular component
nuclear lumen Orthology cellular component
RNA metabolic process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
organelle organization Orthology biological process
transferase activity, transferring phosphorus-containing groups Orthology molecular function
DNA metabolic process Orthology biological process
nuclear body Orthology cellular component

GO (Orthology)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type
snoRNA guided rRNA pseudouridine synthesis Hs biological process
nuclear chromosome, telomeric region Hs cellular component
pseudouridine synthesis Hs biological process
fibrillar center Hs cellular component
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
telomerase holoenzyme complex Hs cellular component
nucleolus Hs cellular component
rRNA processing Hs biological process
telomere maintenance via telomerase Hs biological process
Cajal body Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
rRNA pseudouridine synthesis Hs biological process
box H/ACA snoRNP complex Hs cellular component
box H/ACA snoRNA binding Hs molecular function
ribosome biogenesis Hs biological process
telomerase RNA binding Hs molecular function
box H/ACA scaRNP complex Hs cellular component
box H/ACA telomerase RNP complex Hs cellular component

GO (Blast)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae
Type Score E-value
nuclear chromosome, telomeric region Hs cellular component 153 3.00e-47
fibrillar center Hs cellular component 153 3.00e-47
RNA binding Hs molecular function 153 3.00e-47
protein binding Hs molecular function 153 3.00e-47
nucleus Hs cellular component 153 3.00e-47
nucleoplasm Hs cellular component 153 3.00e-47
telomerase holoenzyme complex Hs cellular component 153 3.00e-47
nucleolus Hs cellular component 153 3.00e-47
Cajal body Hs cellular component 153 3.00e-47
intracellular ribonucleoprotein complex Hs cellular component 153 3.00e-47
box H/ACA snoRNP complex Hs cellular component 153 3.00e-47
box H/ACA snoRNA binding Hs molecular function 153 3.00e-47
telomerase RNA binding Hs molecular function 153 3.00e-47
box H/ACA scaRNP complex Hs cellular component 153 3.00e-47
box H/ACA telomerase RNP complex Hs cellular component 153 3.00e-47

GO (InterProScan)

3 results

GO Term Analysis Type e-value
pseudouridine synthesis PANTHER biological process 4.8E-58
box H/ACA snoRNP complex PANTHER cellular component 4.8E-58
ribosome biogenesis PANTHER biological process 4.8E-58